Three big changes occured:

-> gtgen-ng was renamed to mitopacq (spelled as MitoPacq in official documents)
-> tools renamed to scripts, src/tools introduced
-> many tools from the CBIA Optical flow collection of tools was
	adopted in this archive, you'll find them in src/tools as well as
	former src/toolbox/motion etc.

M    Doxyfile					- changed gtgen-ng to mitopacq
M    CMakeLists.txt			- adds the new tools
									- the binary gtgen-ng renamed to mitopacq

M    scripts/finalize.sh	- changed the name of the binary: gtgen-ng -> mitopacq
M    scripts/visualize_scheduling/prepareSchedulingPlot.sh  - ranamed gtgen-ng to mitopacq

M    src/main.cpp				- changed advice at the end: gtgen-ng -> mitopacq
M    src/scheduler.cpp		- changed the name of the lock file: gtgen-ng -> mitopacq

D    tools
D    src/toolbox/tracks
D    src/toolbox/motion
A    src/tools
A    src/tools/imagetognuplot.cpp
A    src/tools/imageinfo.cpp
A    src/tools/getslice.cpp
A    src/tools/floattogray16.cpp
A    src/tools/dt.cpp
A    src/tools/rotate90.cpp
A  + src/tools/correct_tracks.cpp
A    src/tools/resample.cpp
A    src/tools/readFFvector.cpp
A    src/tools/equalize.cpp
A    src/tools/log.cpp
A    src/tools/gauss.cpp
D    scripts/getMax.cpp
A  + src/tools/getMax.cpp
A    src/tools/pointstovtklegacy.cpp
A    src/tools/getrange.cpp
A  + src/tools/remove_label.cpp
A    src/tools/threshold.cpp
A    src/tools/median.cpp
A    src/tools/histogram.cpp
A    src/tools/changeformat.cpp
A    src/tools/imagetovtklegacy.cpp
A  + src/tools/apply_mask.cpp
A  + src/tools/extract_flow.cpp
A    src/tools/setoffset.cpp
A    src/tools/crop.cpp
A    src/tools/historyimage.cpp
A    src/tools/divide.cpp
A    src/tools/compose.cpp
A    src/tools/substract.cpp
A    src/tools/transpose.cpp
A    src/tools/multiply.cpp
A    src/tools/convolution.cpp
A    src/tools/setresolution.cpp
A    src/tools/floattogray8.cpp
A    src/tools/makeaf.cpp
A  + src/tools/merge_images.cpp
A    src/tools/build3D.cpp
A    src/tools/graytogray.cpp
A    src/tools/flip.cpp
A    src/tools/graytofloat.cpp
A  + scripts
D    scripts/batch_cmd.sh