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Created with Raphaël 2.2.014Apr1310927Mar262524232221201918171613121110986543227Feb262524232220191817111098764231Jan30292827262314139829Dec18171615107532130Nov2827262524232221201817161513121110630Oct292827242321181715131211632130Sep29272625242322Added crd pluginMerge branch 'v2.1'Fixed warningAdded regtest for gradientThis change is necessary as the code was wrong beforeThese changes give a small speed increaseUpdated internal molfiles to VMD 1.9.2Merge remote-tracking branch 'origin/fix-133'MolInfo: doc and typosrt-dfg2 made faster using 2 procs onlyMerge branch 'v2.1'Fixed warningImproved MOLFILEImproved MolDataClassFixed epsilon and zeta torsionsSmall change to allow Gabriele to do cluster+surfaceensemble: clarified bug in changesMerge branch 'v2.1'changelogMade test for ENSEMBLE more strictFixed ENSEMBLE derivativesAdded debug flags on travisMerge branch 'v2.1'better doc for WRAPAROUNDFixed WHOLEMOLECULES docAdded safety checks in wrapper/Plumed.cChnages to VolumeInCylinderSmall change to way that angles are parsedchangelogDoc for rna/dna typesdocSome specialized vector stuffReplaced all valarray with vectorSquashed commit from fccubic"while" implementation for pbcheadersMerge branch 'v2.1'headersregtest for puck phs and ampRevert "Added tests for phase and amplitude"