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Created with Raphaël 2.2.017Apr141373229Mar282724221813111098765432128Feb2720191715141210974330Jan2927242317161513987653215Dec225Nov241512116517Oct161514121110942130Sep27191210965431Aug302928242117139765131Jul3029282726242322fixed header bug, from shiftC to rct and various other minor thingsMerge branch 'master' into opesfix regtestFix typo (#560)Plumedbot commit: headers (#564)Fix regtest issue (#563)Environment similarity collective variable (#562)Merge branch 'master' into fancy-examplesRan astyleAttempt to fix reporting of errors in examples on githubNow run show errors for building of user documentation so that errors in building appear on logMoved location of code to send message about example errorsfixed bug in initializationfix log.printf comm bug aslo herefixed bug with multiple indipendent replicas with multiple threadsbetter docavoid strcasecmpupdated bibliographyimproved restartAdded stuff to push errors in examples to commit message on githubAdded command to make file with list of broken examplesadded ADD_P0 flagFixed headers with astylenorm to zed renaming, and better adaptive sigmaadjusted first adaptive sigma measurementMerge pull request #559 from PlumedBot/master-210a8276fPlumedbot commit: headersMerge branch 'master' into opesminor adjustmentsAdded option to ConvertToFes to set mininum in free energy surface to zeroMerge branch 'master' into opesadded adaptive sigmaadded explore variantMerge branch 'fancy-examples' of https://github.com/plumed/plumed2 into fancy-examplesFixed the documentation for INCLUDE, LOAD and aa-lugano-2small fixSmall fix to output of manual examples that contain shortcuts to make sure they appear correctlyMerge branch 'master' into fancy-examplesFinal fixes to fancy examples to get things to work on travisEncapsulated part of GenExample that generates full input for shortcuts in a function