This commit contains changes automatically generated by plumedbot on Travis-ci.

This commit contains changes automatically generated by plumedbot on Travis-ci.

- dumpgrid
- pca
- mds

Notice that this change required a bit of hacking.
setAveragingAction now takes a std::unique_ptr as an argument.

I think ownership is clearer now since it is explicitly declared.

(still a stylistic warning)

Notice that files are closed on destructor anyway.

This commit contains changes automatically generated by plumedbot on Travis-ci.

This commit contains changes automatically generated by plumedbot on Travis-ci.

I went through cppcheck warnings (style) and fixes those I understood.
Mostly issues related to scope of variables.

Not complete yet

Regenerated after c40b96fe

Regenerated after c40b96fe

After \par Examples there should be an empty line

[makedoc]

[makedoc]

Changed histogram so that it is calculated by default using Giovanni's formula for reweighted histogram

[makedocs]