A section was not properly shown

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lapack and blas README files were not shown.

I guess this happened with some doxygen update that ignores README files.
Solved renaming to README.md.

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This reverts commit 366e00d6, reversing
changes made to 1cd9c350.

I think I made a mistake in a branch and overwrote the VERSION number

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evaluate gaussian was using always the periodicity of argument 0
plus some reorganisation of the code

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There was an issue when using
plumed vim2html --pdf --crop
on a plumed.dat file that is in a different directory.

(fixed by @a-cesari)

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This module was not actually maintained.

In case someone is interested in restoring it, contact the developers

After 7435705a
the correct "plumed_needs" keyword for molfile is "molfile_plugins"

Before:
- active modules were found based on on/off files.
- name of directory enclosing tests was used

After:
- active modules are found with "plumed config"
- modules are excluded explicitly in each rt/config file

Notice that crystallization/rt-urea needs two modules:
crystallization and adjmat

Actually I think the list of available modules in the Portfile
should be generated automatically

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It works creating a local Portfile so as to test
non released plumed versions.

and regtest reset