Ready for merge. Nothing should change with existing Makefile.conf.

Now needs PLUMED_INTERNAL_LAPACK/BLAS to use the internal version,
and by default uses external one. This makes it more coherent with
master branch.

Thus:

One can either use external libraries with:

CPPGLAFS=-D__PLUMED_INTERNAL_BLAS -D__PLUMED_INTERNAL_LAPACK

uses internal ones, whereas:

DYNAMIC_LIBS=-lwhatever_appropriate

uses external ones.

I fixed it so that it *Really* works with both internal and external
lapack/blas. The only drawback (I could not do it better) is that
both lapack and blas should be either internal or external.

(thanks to Toni Giorgino)

I fixed a missing include.

Original comment:
Fixes in backup output files - cant rename open file under windows - print reason for failure - remove leak of FILE*s

(cherry picked from commit 448e84fc)

(cherry picked from commit 2c272e4a)

closes #6

(thanks to Toni Giorgino)

I fixed a missing include.

Original comment:
Fixes in backup output files - cant rename open file under windows - print reason for failure - remove leak of FILE*s

Changed the internal enum in switching function (for clarity)

This addresses #43

This is to avoid false errors in regtest

Coordination is now faster by approx 15% when using even
NN, even MM and d0=0

Closes #43.