I replaced everywhere it made sense the new Communicator class
syntax. This commit is not strictly necessary, but provides
examples of the simpler syntax so I think should be merged

In analysis runs results from previous analysis are saved as
analysis.0.<filename>, analysis.1.<filename> etc.  If the calculation
is NOT restarted and there are files with these names hanging about they are
renamed bck.0.analysis.0.<filename> bck.0.analysis.1.<filename> etc.

Having the backup string specified in OFile::open leads to clashes
with the routine that sets open using w+, w, rw etc.  It is thus changed
so that you can set the backup string to use with a separate method in the class

Made it so that virtual routine is not called from constructor.  If the calculation
is terminated during the analysis phase then the analysis is now restarted when
the calculation reaches update on the first loop.  I also removed the duplicated
backup code that was in analysis.  Backup is now done by the routines in OFile.
This routine is now a little more flexible in that you can specify the string
in the backup name.

Allows to switch off auto backup or to change the maximum number of 
backups