I have noticed that on some machines one needs to add  -lgfortran
to link blas and lapack correctly (manual updated).

now set to 1.
Close #86

now set to 1.
Close #86

It was not compiling on BGQ

Sorry for this - on linux/intel it was compiling properly

added PERIODIC=NO in the example because this keyword is compulsory.

rescaled in case of WTMetaD.

(cherry picked from commit ee3c0a9a)

(cherry picked from commit 6a5f8288)

Conflicts:
	src/bias/MetaD.cpp

I also changed it to test potential far away from the border

I improved the fix to correctly updated the grids far from Gaussian centers.

Also took the opportunity to fix a couple of errors in other parts of the
developer documentation

All components now have to be registered in registerKeywords so that
documentation on what componets are available in a given action are
available in the manual.  Currently the code gives a warning if a user
tries to use a component that is not properly described in the manual.
In the future (v2.2) this warning will be replaced by an error.  That
is to say you wont be allowed to use unregistered components.  This is
all described more in #76

I changed the behavior of METAD INTERVAL in such a way that the bias
is correctly set to the value at the boundary when the CV is outside
of the interval. This changes the behavior of plumed when using
METAD INTERVAL and any sort of replica exchange (e.g. bias exchange).

Before the fix the bias was incorrectly set to zero outside the
interval.

* NOTICE THAT THIS BEHAVIOR IS DIFFERENT FROM THAT IMPLEMENTED
  IN PLUMED 1*

The only way to have something working has been to include a "VERSION"
file in the root dir which should be updated by hand when releasing.
Additionally, plumed --git-version can be used

(cherry picked from commit 2ccba594)

    Backported changes from master to fix "plumed mklib"

    There was a problem with Makefile.conf as produced with ./configure
    if used in v2.0. This fix allows to use new Makefile.conf with old
    (2.0) plumed.

    This should fix the problem with rt15 mentioned by Gareth in
    the discussion of #76

Conflicts:
	src/config/Makefile

Addresses #74 (warning only)

Merged a branch with a modified gromacs 4.6 patch which
allows for better load balancing when using gromacs
with GPUs.

Fixes #71