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Moved collection of data for analysis to separate action
Also tidied up how STRIDE and USE_ALL_DATA works for analysis objects. Now everything works in a manner similar to GRID
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- src/colvar/PropertyMap.cpp 1 addition, 2 deletionssrc/colvar/PropertyMap.cpp
- src/core/ActionWithArguments.cpp 2 additions, 7 deletionssrc/core/ActionWithArguments.cpp
- src/dimred/DimensionalityReductionBase.cpp 17 additions, 5 deletionssrc/dimred/DimensionalityReductionBase.cpp
- src/dimred/DimensionalityReductionBase.h 4 additions, 2 deletionssrc/dimred/DimensionalityReductionBase.h
- src/dimred/PCA.cpp 99 additions, 63 deletionssrc/dimred/PCA.cpp
- src/dimred/ProjectNonLandmarkPoints.cpp 17 additions, 13 deletionssrc/dimred/ProjectNonLandmarkPoints.cpp
- src/dimred/SketchMapRead.cpp 80 additions, 36 deletionssrc/dimred/SketchMapRead.cpp
- src/mapping/Mapping.cpp 16 additions, 16 deletionssrc/mapping/Mapping.cpp
- src/mapping/Mapping.h 6 additions, 3 deletionssrc/mapping/Mapping.h
- src/mapping/PCAVars.cpp 3 additions, 4 deletionssrc/mapping/PCAVars.cpp
- src/mapping/Path.cpp 0 additions, 6 deletionssrc/mapping/Path.cpp
- src/mapping/PathReparameterization.cpp 4 additions, 4 deletionssrc/mapping/PathReparameterization.cpp
- src/mapping/PathTools.cpp 27 additions, 21 deletionssrc/mapping/PathTools.cpp
- src/mapping/PropertyMap.cpp 2 additions, 2 deletionssrc/mapping/PropertyMap.cpp
- src/mapping/TrigonometricPathVessel.cpp 4 additions, 4 deletionssrc/mapping/TrigonometricPathVessel.cpp
- src/reference/DRMSD.cpp 6 additions, 6 deletionssrc/reference/DRMSD.cpp
- src/reference/DRMSD.h 1 addition, 1 deletionsrc/reference/DRMSD.h
- src/reference/Direction.cpp 1 addition, 1 deletionsrc/reference/Direction.cpp
- src/reference/IntermolecularDRMSD.cpp 1 addition, 1 deletionsrc/reference/IntermolecularDRMSD.cpp
- src/reference/IntramolecularDRMSD.cpp 1 addition, 1 deletionsrc/reference/IntramolecularDRMSD.cpp
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