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Martin Kurečka
Plumed AlphaFold
Commits
cb8765ee
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Commit
cb8765ee
authored
13 years ago
by
Giovanni Bussi
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Added some note on advanced options (only for developers)
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@@ -12,9 +12,9 @@ Actions (choose one):
...
@@ -12,9 +12,9 @@ Actions (choose one):
-l, --list-engines
-l, --list-engines
print a list of available MD engines
print a list of available MD engines
-s, --save
-s, --save
save (
FOR DEVELOPERS
)
save (
*
)
-n NEWENGINE, --new NEWENGINE
-n NEWENGINE, --new NEWENGINE
create a new patch named NEWENGINE
create a new patch named NEWENGINE
(*)
Options:
Options:
-e ENGINE, --engine ENGINE
-e ENGINE, --engine ENGINE
set MD engine to ENGINE (default: choose interactively)
set MD engine to ENGINE (default: choose interactively)
...
@@ -27,9 +27,12 @@ Options:
...
@@ -27,9 +27,12 @@ Options:
--runtime
--runtime
same as --mode runtime
same as --mode runtime
-d FILE, --diff FILE
-d FILE, --diff FILE
set the path to diff file (default: ROOT/patches/ENGINE.diff) (
FOR TESTING
)
set the path to diff file (default: ROOT/patches/ENGINE.diff) (
*
)
-f, --force
-f, --force
force patching (FOR TESTING)
force patching (*)
(*) These options are for developers or for testing only. Be sure to know what
you are doing before you use them.
"
"
prefix
=
""
prefix
=
""
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