missing files

user-doc/tutorials/aaa-master-ISDD-1.txt

@@ -39,12 +39,12 @@ can be downloaded from `GitHub` using the following command:
 wget https://github.com/plumed/lugano2019/raw/master/handson_1/handson_1.tgz 
 \endverbatim
 
-The zip archive contains the following files:
+The archive contains the following files:
 - GB1_native.pdb : A PDB file with the native structure of the GB1 protein.
 - traj-whole.xtc: A trajectory in xtc format. To make the exercise easier, GB1 has been made whole already.
 - traj-broken.xtc: The same trajectory as it was originally produced by GROMACS. Here GB1 is broken by periodic boundary conditions and should be fixed.
 
-The archive can be opened with the following command:
+The archive can be unpacked using the following command:
 \verbatim
 tar xvzf handson_1.tgz
 \endverbatim

user-doc/tutorials/aaa-master-ISDD-2.txt

@@ -24,6 +24,11 @@ The \tarball{master-ISDD-2} for this project contains the following files:
 - diala.pdb: a PDB file for alanine dipeptide in vacuo
 - topol.tpr: a GROMACS run file to perform MD of alanine dipeptide
 
+The archive can be unpacked using the following command:
+\verbatim
+tar xvzf master-ISDD-2.tar.gz
+\endverbatim
+
 This tutorial has been tested on version 2.5.1.
 
 \section master-ISDD-2-intro Introduction

user-doc/tutorials/master-ISDD-2/diala.pdb

+ATOM      1 1HH3 ACE     1      15.700  13.120  -0.270  1.00  0.00            
+ATOM      2  CH3 ACE     1      14.670  12.910  -0.560  1.00  0.00            
+ATOM      3 2HH3 ACE     1      14.080  12.680   0.330  1.00  0.00            
+ATOM      4 3HH3 ACE     1      14.550  12.130  -1.310  1.00  0.00            
+ATOM      5  C   ACE     1      14.140  14.180  -1.210  1.00  0.00            
+ATOM      6  O   ACE     1      12.990  14.170  -1.650  1.00  0.00            
+ATOM      7  N   ALA     2      14.940  15.200  -1.540  1.00  0.00            
+ATOM      8  H   ALA     2      15.870  15.140  -1.150  1.00  0.00            
+ATOM      9  CA  ALA     2      14.600  16.550  -1.940  1.00  0.00            
+ATOM     10  HA  ALA     2      13.610  16.860  -1.590  1.00  0.00            
+ATOM     11  CB  ALA     2      15.650  17.430  -1.260  1.00  0.00            
+ATOM     12  HB1 ALA     2      16.670  17.190  -1.550  1.00  0.00            
+ATOM     13  HB2 ALA     2      15.420  18.460  -1.520  1.00  0.00            
+ATOM     14  HB3 ALA     2      15.490  17.340  -0.190  1.00  0.00            
+ATOM     15  C   ALA     2      14.330  16.660  -3.430  1.00  0.00            
+ATOM     16  O   ALA     2      14.330  17.750  -4.010  1.00  0.00            
+ATOM     17  N   NME     3      14.120  15.510  -4.080  1.00  0.00            
+ATOM     18  H   NME     3      13.940  14.630  -3.620  1.00  0.00            
+ATOM     19  CH3 NME     3      13.800  15.620  -5.490  1.00  0.00            
+ATOM     20 1HH3 NME     3      13.140  14.830  -5.860  1.00  0.00            
+ATOM     21 2HH3 NME     3      13.250  16.540  -5.710  1.00  0.00            
+ATOM     22 3HH3 NME     3      14.690  15.590  -6.120  1.00  0.00            
+TER
+ENDMDL