Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
P
Plumed AlphaFold
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Requirements
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Locked files
Deploy
Releases
Package registry
Model registry
Operate
Terraform modules
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Martin Kurečka
Plumed AlphaFold
Commits
621a0418
There was an error fetching the commit references. Please try again later.
Commit
621a0418
authored
9 years ago
by
Gareth Tribello
Browse files
Options
Downloads
Plain Diff
Merge branch 'master' of
https://github.com/plumed/plumed2
parents
3b16b513
13b4d553
No related branches found
No related tags found
No related merge requests found
Changes
4
Hide whitespace changes
Inline
Side-by-side
Showing
4 changed files
CHANGES/v2.1.txt
+3
-0
3 additions, 0 deletions
CHANGES/v2.1.txt
CHANGES/v2.2.txt
+4
-0
4 additions, 0 deletions
CHANGES/v2.2.txt
src/analysis/Histogram.cpp
+4
-0
4 additions, 0 deletions
src/analysis/Histogram.cpp
src/tools/SwitchingFunction.cpp
+1
-1
1 addition, 1 deletion
src/tools/SwitchingFunction.cpp
with
12 additions
and
1 deletion
CHANGES/v2.1.txt
+
3
−
0
View file @
621a0418
...
@@ -244,6 +244,9 @@ For users:
...
@@ -244,6 +244,9 @@ For users:
Unreleased changes (will be included in 2.1.5)
Unreleased changes (will be included in 2.1.5)
---------------------------------------------
---------------------------------------------
For users:
- PLUMED now reports an error when using \ref HISTOGRAM with FREE-ENERGY without USE_ALL_DATA. See \issue{175}
See branch \branch{v2.1} on git repository.
See branch \branch{v2.1} on git repository.
...
...
This diff is collapsed.
Click to expand it.
CHANGES/v2.2.txt
+
4
−
0
View file @
621a0418
...
@@ -92,6 +92,10 @@ at what has been done to the other multicolvars in there for guidance. Sorry fo
...
@@ -92,6 +92,10 @@ at what has been done to the other multicolvars in there for guidance. Sorry fo
Unreleased changes (will be included in 2.2.1)
Unreleased changes (will be included in 2.2.1)
---------------------------------------------
---------------------------------------------
For users:
- PLUMED now reports an error when using \ref HISTOGRAM with UNNORMALIZED without USE_ALL_DATA. See \issue{175}
For developers:
For developers:
- ./configure is automatically relaunched when changing ./configure or Makefile.conf. This makes it more robust
- ./configure is automatically relaunched when changing ./configure or Makefile.conf. This makes it more robust
to switch between branches.
to switch between branches.
...
...
This diff is collapsed.
Click to expand it.
src/analysis/Histogram.cpp
+
4
−
0
View file @
621a0418
...
@@ -108,6 +108,8 @@ HISTOGRAM ...
...
@@ -108,6 +108,8 @@ HISTOGRAM ...
... HISTOGRAM
... HISTOGRAM
\endverbatim
\endverbatim
\bug Option FREE-ENERGY or UNNORMALIZED without USE_ALL_DATA is not working properly. See \issue{175}.
*/
*/
//+ENDPLUMEDOC
//+ENDPLUMEDOC
...
@@ -234,6 +236,8 @@ void Histogram::performAnalysis(){
...
@@ -234,6 +236,8 @@ void Histogram::performAnalysis(){
Grid
*
gg
;
IFile
oldf
;
oldf
.
link
(
*
this
);
Grid
*
gg
;
IFile
oldf
;
oldf
.
link
(
*
this
);
if
(
usingMemory
()
&&
oldf
.
FileExist
(
gridfname
)
){
if
(
usingMemory
()
&&
oldf
.
FileExist
(
gridfname
)
){
if
(
fenergy
)
error
(
"FREE-ENERGY only works with USE_ALL_DATA"
);
if
(
unnormalized
)
error
(
"UNNORMALIZED only works with USE_ALL_DATA"
);
oldf
.
open
(
gridfname
);
oldf
.
open
(
gridfname
);
gg
=
Grid
::
create
(
"probs"
,
getArguments
(),
oldf
,
gmin
,
gmax
,
gbin
,
false
,
false
,
false
);
gg
=
Grid
::
create
(
"probs"
,
getArguments
(),
oldf
,
gmin
,
gmax
,
gbin
,
false
,
false
,
false
);
oldf
.
close
();
oldf
.
close
();
...
...
This diff is collapsed.
Click to expand it.
src/tools/SwitchingFunction.cpp
+
1
−
1
View file @
621a0418
...
@@ -61,7 +61,7 @@ s(r)=\frac{ 1 - \left(\frac{ r - d_0 }{ r_0 }\right)^{n} }{ 1 - \left(\frac{ r -
...
@@ -61,7 +61,7 @@ s(r)=\frac{ 1 - \left(\frac{ r - d_0 }{ r_0 }\right)^{n} }{ 1 - \left(\frac{ r -
\f$
\f$
</td> <td>
</td> <td>
{RATIONAL R_0=\f$r_0\f$ D_0=\f$d_0\f$ NN=\f$n\f$ MM=\f$m\f$}
{RATIONAL R_0=\f$r_0\f$ D_0=\f$d_0\f$ NN=\f$n\f$ MM=\f$m\f$}
</td> <td> \f$d_0=0.0\f$, \f$n=6\f$, \f$m=
1
2\f$ </td>
</td> <td> \f$d_0=0.0\f$, \f$n=6\f$, \f$m=2
n
\f$ </td>
</tr> <tr>
</tr> <tr>
<td> EXP </td> <td>
<td> EXP </td> <td>
\f$
\f$
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment