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Initial version
This is the draft version that I prepared and that we will use as a starting point. Still it is a bit dirty, and I will try to improve documentation and delete unused routines
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- imd/Makefile 27 additions, 0 deletionsimd/Makefile
- include/Plumed.h 1 addition, 0 deletionsinclude/Plumed.h
- patches/amber9.config 6 additions, 0 deletionspatches/amber9.config
- patches/amber9.diff 268 additions, 0 deletionspatches/amber9.diff
- patches/gromacs-4.0.7.config 6 additions, 0 deletionspatches/gromacs-4.0.7.config
- patches/gromacs-4.0.7.diff 253 additions, 0 deletionspatches/gromacs-4.0.7.diff
- patches/gromacs-4.5.3.config 6 additions, 0 deletionspatches/gromacs-4.5.3.config
- patches/gromacs-4.5.3.diff 236 additions, 0 deletionspatches/gromacs-4.5.3.diff
- patches/namd-2.7.config 6 additions, 0 deletionspatches/namd-2.7.config
- patches/namd-2.7.diff 264 additions, 0 deletionspatches/namd-2.7.diff
- patches/patch.sh 254 additions, 0 deletionspatches/patch.sh
- src/.gitignore 2 additions, 0 deletionssrc/.gitignore
- src/Action.cpp 83 additions, 0 deletionssrc/Action.cpp
- src/Action.h 166 additions, 0 deletionssrc/Action.h
- src/ActionAtomistic.cpp 49 additions, 0 deletionssrc/ActionAtomistic.cpp
- src/ActionAtomistic.h 101 additions, 0 deletionssrc/ActionAtomistic.h
- src/ActionPilot.cpp 24 additions, 0 deletionssrc/ActionPilot.cpp
- src/ActionPilot.h 25 additions, 0 deletionssrc/ActionPilot.h
- src/ActionRegister.cpp 59 additions, 0 deletionssrc/ActionRegister.cpp
- src/ActionRegister.h 69 additions, 0 deletionssrc/ActionRegister.h
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