Improved devel doxyfile

developer-doc/.gitignore

@@ -4,5 +4,4 @@
 /automatic
 /*PP.txt
 /links-to-user-manual.txt
-/Doxyfile
 

developer-doc/Doxyfile.in → developer-doc/Doxyfile

@@ -738,7 +738,6 @@ INPUT                  = ./Intro.txt \
                          ./plmdIntro.txt \
                          ./usingDoxygen.txt \
                          ./parsing.txt \
-                         @SRCDIR@ \
                          ./links-to-user-manual.txt \
                          ./AddingAColvar.txt \
                          ./AddingAFunction.txt \
@@ -911,13 +910,13 @@ STRIP_CODE_COMMENTS    = NO
 # function all documented functions referencing it will be listed.
 # The default value is: NO.
 
-REFERENCED_BY_RELATION = @MAYBE@
+REFERENCED_BY_RELATION = NO
 
 # If the REFERENCES_RELATION tag is set to YES then for each documented function
 # all documented entities called/used by that function will be listed.
 # The default value is: NO.
 
-REFERENCES_RELATION    = @MAYBE@
+REFERENCES_RELATION    = NO
 
 # If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
 # to YES, then the hyperlinks from functions in REFERENCES_RELATION and

developer-doc/Makefile

@@ -3,8 +3,8 @@
 
 all:
 	./extract
-	doxygen
+	./go-doxygen
 	cp Octocat.png html/
 
 clean:
-	rm -fr automatic html latex *~ links-to-user-manual.txt Doxyfile
+	rm -fr automatic html latex *~ links-to-user-manual.txt

developer-doc/extract

 #!/bin/bash
 
-sed s:@SRCDIR@:"$(echo ../src/*/ ../src/*/*/)": Doxyfile.in|
-sed s:@MAYBE@:NO: > Doxyfile
-
 cat ../src/*/*cpp |
 awk '
   /PLUMED_REGISTER_ACTION/{print}

developer-doc/go-doxygen

+#! /bin/bash
+
+{
+  cat Doxyfile
+  echo "PROJECT_NUMBER = \"$(plumed info --version)\""
+  echo "INPUT+=" ../src/*/ ../src/*/*/
+  echo "REFERENCES_RELATION=NO"
+  echo "REFERENCED_BY_RELATION=NO"
+} | doxygen -