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Martin Kurečka
Plumed AlphaFold
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438299b5
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438299b5
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Massimiliano Bonomi
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user-doc/tutorials/a-trieste-4.txt
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@@ -297,7 +297,7 @@ equilibrate before the free energy along \f$ \psi \f$ can converge.
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@@ -297,7 +297,7 @@ equilibrate before the free energy along \f$ \psi \f$ can converge.
Try to repeat the analysis done in the previous exercize, i.e. calculate the estimate of the free energy as a function of time,
Try to repeat the analysis done in the previous exercize, i.e. calculate the estimate of the free energy as a function of time,
first step to assess the convergence of this metadynamics simulation.
first step to assess the convergence of this metadynamics simulation.
\section trieste-4-ex-3 Exercize 3: estimating the error in free-energies
with
block-analysis
\section trieste-4-ex-3 Exercize 3: estimating the error in free-energies
using
block-analysis
In this exercise, we will calculate the error associated to the free-energy reconstructed
In this exercise, we will calculate the error associated to the free-energy reconstructed
by a well-tempered metadynamics simulation. The free energy and the errors will be calculated
by a well-tempered metadynamics simulation. The free energy and the errors will be calculated
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