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Martin Kurečka
Plumed AlphaFold
Commits
2e40bd1f
There was an error fetching the commit references. Please try again later.
Commit
2e40bd1f
authored
11 years ago
by
Giovanni Bussi
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Regtest for METAD TAU
parent
ed84f99d
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2 changed files
regtest/basic/rt11/forces.reference
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regtest/basic/rt11/forces.reference
regtest/basic/rt11/plumed.dat
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regtest/basic/rt11/plumed.dat
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9 deletions
regtest/basic/rt11/forces.reference
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2e40bd1f
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@@ -219,8 +219,8 @@ X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
108
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X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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@@ -329,8 +329,8 @@ X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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@@ -339,7 +339,7 @@ X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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3.820888 0.436543 4.733505
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7.641777 0.873085 9.467012
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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5.051129 0.924951 7.179011
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X 0.000000 0.000000 0.000000
X 0.000000 0.000000 0.000000
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regtest/basic/rt11/plumed.dat
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@@ -3,6 +3,10 @@ vol: VOLUME
METAD ARG=d1,vol SIGMA=0.1,0.2 HEIGHT=1.0 PACE=10 LABEL=md TEMP=300 GRID_MIN=0.0,120.0 GRID_MAX=2.0,130.0 BIASFACTOR=10 GRID_BIN=100,100 FMT=%14.6f
# this is doubling the force
# (to test TAU)
METAD ARG=d1,vol SIGMA=0.1,0.2 TAU=1.122452 PACE=10 TEMP=300 GRID_MIN=0.0,120.0 GRID_MAX=2.0,130.0 BIASFACTOR=10 GRID_BIN=100,100 FMT=%14.6f FILE=HILLSX
PRINT ...
STRIDE=1
ARG=d1,vol,md.bias
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