Merge branch 'master' into molfile_plugin

CHANGES/Unreleased.txt

Makefile

patches/gromacs-4.6.3.diff

patches/gromacs-4.6.3.diff/src/kernel/CMakeLists.txt

...es/gromacs-4.6.3.diff/src/kernel/CMakeLists.txt.preplumed

patches/gromacs-4.6.3.diff/src/kernel/md.c

patches/gromacs-4.6.3.diff/src/kernel/md.c.preplumed

patches/gromacs-4.6.3.diff/src/kernel/mdrun.c

patches/gromacs-4.6.3.diff/src/kernel/mdrun.c.preplumed

patches/gromacs-4.6.3.diff/src/kernel/repl_ex.c

patches/gromacs-4.6.3.diff/src/kernel/repl_ex.c.preplumed

patches/patch.sh

patches/qespresso-5.0.2.diff

patches/qespresso-5.0.2.diff/PW/src/forces.f90

patches/qespresso-5.0.2.diff/PW/src/forces.f90.preplumed

patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90

...s/qespresso-5.0.2.diff/PW/src/plugin_forces.f90.preplumed

...hes/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90

...sso-5.0.2.diff/PW/src/plugin_initialization.f90.preplumed

patches/qespresso-5.0.2.diff/PW/src/pwscf.f90