Typos

CHANGES/Unreleased.txt

@@ -39,10 +39,10 @@ Changes from version 2.0 which are relevant for users:
   - \ref DUMPATOMS : PRECISION option to set number of digits in output file.
   - \ref GROUP : NDX_FILE and NDX_GROUP options to import atom lists from ndx (gromacs) files.
   - In many multicolvars, MIN and MAX options can be used.
-  - \ref HISTOGRAM: GRID_SPACING (alternative to GRID_BIN to set grid spacing),
+  - \ref HISTOGRAM : GRID_SPACING (alternative to GRID_BIN to set grid spacing),
     FREQUENCY and FREE-ENERGY flags in addition to standard probability density,
     additional option for KERNEL=NONE to accumulate standard histograms. 
-  - \ref sum_hills: added options --spacing (alternative to --bin to set grid spacing)
+  - \ref sum_hills : added options --spacing (alternative to --bin to set grid spacing)
     and --setmintozero to translate the minimum of the output files to zero.
 - New features in MD patches (require repatch):
   - Gromacs 4.6.5 support \ref COMMITTOR analysis.

src/crystallization/Q3.cpp

@@ -126,7 +126,7 @@ quantity for each of the atoms in the system:
  
 where \f$q_{3m}(i)\f$ and \f$q_{3m}(j)\f$ are the 3rd order Steinhardt vectors calculated for atom \f$i\f$ and atom \f$j\f$ respectively and the asterix denotes complex
 conjugation.  The function
-\f$\sigma( r_{ij} )\f$ is a \ref switching function that acts on the distance between atoms \f$i\f$ and \f$j\f$.  The parameters of this function should be set 
+\f$\sigma( r_{ij} )\f$ is a \ref switchingfunction that acts on the distance between atoms \f$i\f$ and \f$j\f$.  The parameters of this function should be set 
 so that it the function is equal to one when atom \f$j\f$ is in the first coordination sphere of atom \f$i\f$ and is zero otherwise.  The sum in the numerator
 of this expression is the dot product of the Steinhardt parameters for atoms \f$i\f$ and \f$j\f$ and thus measures the degree to which the orientations of these
 adjacent atoms is correlated.

src/crystallization/Q4.cpp

@@ -126,7 +126,7 @@ quantity for each of the atoms in the system:
  
 where \f$q_{4m}(i)\f$ and \f$q_{4m}(j)\f$ are the 4th order Steinhardt vectors calculated for atom \f$i\f$ and atom \f$j\f$ respectively and the asterix denotes
 complex conjugation.  The function
-\f$\sigma( r_{ij} )\f$ is a \ref switching function that acts on the distance between atoms \f$i\f$ and \f$j\f$.  The parameters of this function should be set 
+\f$\sigma( r_{ij} )\f$ is a \ref switchingfunction that acts on the distance between atoms \f$i\f$ and \f$j\f$.  The parameters of this function should be set 
 so that it the function is equal to one when atom \f$j\f$ is in the first coordination sphere of atom \f$i\f$ and is zero otherwise.  The sum in the numerator
 of this expression is the dot product of the Steinhardt parameters for atoms \f$i\f$ and \f$j\f$ and thus measures the degree to which the orientations of these
 adjacent atoms is correlated.

src/crystallization/Q6.cpp

@@ -126,7 +126,7 @@ quantity for each of the atoms in the system:
  
 where \f$q_{6m}(i)\f$ and \f$q_{6m}(j)\f$ are the 6th order Steinhardt vectors calculated for atom \f$i\f$ and atom \f$j\f$ respectively and the asterix denotes 
 complex conjugation.  The function
-\f$\sigma( r_{ij} )\f$ is a \ref switching function that acts on the distance between atoms \f$i\f$ and \f$j\f$.  The parameters of this function should be set 
+\f$\sigma( r_{ij} )\f$ is a \ref switchingfunction that acts on the distance between atoms \f$i\f$ and \f$j\f$.  The parameters of this function should be set 
 so that it the function is equal to one when atom \f$j\f$ is in the first coordination sphere of atom \f$i\f$ and is zero otherwise.  The sum in the numerator
 of this expression is the dot product of the Steinhardt parameters for atoms \f$i\f$ and \f$j\f$ and thus measures the degree to which the orientations of these
 adjacent atoms is correlated.