ignore codecheck on src/lepton

this could be removed by doing the following:

- applying astyle to src/lepton
- fixing namespace used in src/lepton/*.cpp files

developer-doc/Makefile

@@ -25,4 +25,6 @@ coverage:
 	lcov -r coverage.info "*/lapack/*.cpp" "*/lapack/*.h" -o coverage-tmp.info && mv coverage-tmp.info coverage.info
 # remove internal molfile:
 	lcov -r coverage.info "*/molfile/*.cpp" "*/molfile/*.h" -o coverage-tmp.info && mv coverage-tmp.info coverage.info
+# remove internal lepton:
+	lcov -r coverage.info "*/lepton/*.cpp" "*/lepton/*.h" -o coverage-tmp.info && mv coverage-tmp.info coverage.info
 	genhtml -o coverage -t "plumed test coverage" coverage.info

src/astyle.sh

@@ -15,6 +15,7 @@ test -d "$dir" || continue
 test "$dir" = lapack && continue
 test "$dir" = blas && continue
 test "$dir" = molfile && continue
+test "$dir" = lepton && continue
 
 cd $dir
 

src/maketools/codecheck

@@ -58,7 +58,7 @@ CLEAN_FILE="$TMPDIR/codecheck.clean"
 
 echo "++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++"
 echo "  In the following analysis we exclude:"
-echo "    src/molfile src/lapack src/blas"
+echo "    src/molfile src/lapack src/blas src/lepton" 
 echo "  since they are full of false positives"
 cat codecheck.log |
  gawk '{
@@ -67,11 +67,13 @@ cat codecheck.log |
     if(match($0,"[[]lapack/")) next;
     if(match($0,"[[]blas/")) next;
     if(match($0,"[[]molfile/")) next;
+    if(match($0,"[[]lepton/")) next;
   } else {
 # with cppcheck we exclude molfile lapack and blas
     if(match($0,"[[]molfile/")) next;
     if(match($0,"[[]lapack/")) next;
     if(match($0,"[[]blas/")) next;
+    if(match($0,"[[]lepton/")) next;
   }
   print
 }' > "${CLEAN_FILE}"