Merge branch 'v2.0' into v2.1

patches/gromacs-4.5.5.config

@@ -19,9 +19,20 @@ function plumed_after_revert(){
 }
 
 function plumed_patch_info(){
-  echo ""
-  echo "PLUMED can be incorporated into gromacs using a simple patching procedure."
-  echo "Patching must be done _after_ gromacs has been configured but  _before_ gromacs is compiled"
-  echo 
-  echo "For more information on gromacs you should visit http://www.gromacs.org"
+cat << EOF
+
+PLUMED can be incorporated into gromacs using the standard patching procedure.
+Patching must be done in the gromacs source directory  _after_ gromacs has been configured but  _before_ gromacs is compiled.
+Gromcas should be configured with ./configure (not cmake).
+
+To enable PLUMED in a gromacs simulation one should use
+mdrun with an extra -plumed flag. The flag can be used to
+specify the name of the PLUMED input file, e.g.:
+
+mdrun -plumed plumed.dat
+
+For more information on gromacs you should visit http://www.gromacs.org
+
+EOF
 }
+

patches/gromacs-4.6.7.config

@@ -6,9 +6,18 @@ function plumed_preliminary_test(){
 }
 
 function plumed_patch_info(){
-  echo ""
-  echo "PLUMED can be incorporated into gromacs using a simple patching procedure."
-  echo "Patching must be done _before_ the cmake command is invoked"
-  echo
-  echo "For more information on gromacs you should visit http://www.gromacs.org"
+cat << EOF
+
+PLUMED can be incorporated into gromacs using the standard patching procedure.
+Patching must be done in the gromacs root directory  _before_ the cmake command is invoked.
+
+To enable PLUMED in a gromacs simulation one should use
+mdrun with an extra -plumed flag. The flag can be used to
+specify the name of the PLUMED input file, e.g.:
+
+mdrun -plumed plumed.dat
+
+For more information on gromacs you should visit http://www.gromacs.org
+
+EOF
 }