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ActionVolume
abmd
ARG
adjmat
arccos
Antiparallel
antiparallel
ay
az
ballone
basisf
belfast
BerndAdaptivePath
Branduardi
Bravais
Openmp
lincs
HSP
HLE
HSE
GLH
GLU
UNK
TER
NME
iter
cb
hn
nh
protonation
CAshifts
CBshift
Cshifts
Hshifts
HAshifts
HBshifts
metainference
camshift
bz
camilloni
CamShift
Capelli
cav
cdot
Chebyshev
contactmap
contactmatrix
colvar
colvars
CMDIST
committor
crystallinity
CVs
cx
cy
cz
dat
dfs
Diaz
diagonalizing
dihedral
dimensionality
dimred
DSCORE
dn
dists
dkor
dk
je
endlink
hs
Ensing
endverbatim
expsaxs
FES
fes
FMT
frac
FUNC
gaussian
GeTe
GPATH
Granata
gromacs
histogrambead
html
intra
ij
ijk
isdb
isometry
jk
jt
kaolinite
Kohlhoff
labelled
le
legendre
linearexpansion
lj
ln
orthonormal
overline
mathrm
mathbf
mcolv
md
MDS
Mises
MPI
mth
multicolvar
multicolvars
multicolvarfunction
MultiColvarFilter
mymodules
mypath
myprotein
nan
NATOMS
NBIN
ndata
nm
pbc
PCA
pietrucci
polycrystal
png
pdb
Robustelli
provasi
rmsd
saxs
secondarystructure
SMACOF
sqrt
Steinhardt
subregion
switchingfunction
textrm
tribello
Trp
Valsson
Variationally
variationally
vatom
ves
VES
virial
Von
Voth
xyz
regtest
regtests
sigmaMean
acceptSigma
histidine
CBshifts
Nshifts
expca
expcb
expco
expha
exphn
expha
exphn
expnh
acceptScale
biasDer
ftilde
ftilde
Metadynamics
metadynamics
Debye
Huckel
electrostatically
dimers
dimerized
un
centroid
mindist
TOL
kernelfunctions
translational
vibrational
DIA
HY
OY
ABF
eABF
drr
UI
Lelievre
Zheng
overdamped
abf
PMF
Fu
Haohao
Lesage
UIestimator
Langevin
egABF
Zhao
drrstate
egABF
xdrfile
gro
xtc
trr
xdrfile
VMD
GUI
gnuplot
histoA
deriv
mc
mcfile
traj
awk
ixyz
newmc
Marquadt
COVAR
observables
prefactor
prefactors
adaptively
Levenberg
hocky
LM
webpage
cgds
POSIX
REWEIGHT
chebyshev
REGRES
WITHSURFACE
MGAUSS
MOUTLIERS
LOGN
SEM
NMR
chunksize
TAGN
solvation
EEF
Waals
CHARMM
NDX
der
cryo
atomistic
hrex
cvlabel
reweighting
eRMSD
nucleobase
nucleobases
pyrimdines
vectorial
membered
lcs
xy
Rescale
rescaling
TAMD
dAFED
cltools
multicomponents
mincomp
maxcomp
isocontour
mycontour
isocontours
Lennard
rototranslate
rototranslational
ligand
invariance
DFT
FFTW
FFT
sumhills
Spiwok
xz
yz
ndx
Asphericiry
ASPHERICITY
Acylindricity
ACYLINDRICITY
Anisotropy
GTPC
HBOND
acceptor
pamm
HBPAMM
electronegative
preprocessor
intermolecular
Karplus
CCG
NCG
Voronoi
cpp
src
dylib
Lechner
Dellago
entropic
manyrestraints
matheval
pippo
modelling
reweight
posteriori
LAGMULT
INEQUAL
ps
timestep
reweighted
RDCs
MFILTER
MutiColvarFunctions
achiral
resnumbers
chainIDs
topol
gmx
GLY
dna
rna
Davide
GC
chainresiduenum
tpr
editconf
Jarzynski
residuenum
MTRANSFORM
Kearsley
iteratively
SGD
targetdist
coeffs
epath
gpath
PBMetaD
ENDMDL
covar
MAHALONOBIS
Mahalonobis
anisotropic
dipolar
gyromagnetic
GSL
CRYST
piv
namespaces
OSX
libplumedKernel
parallelize
OpenMP
NAMD
ns
Larmor
allv
Pseudorotation
Pople
endo
pseudorotation
pseudorotations
Cremer
NaCl
normed
DCs
conformational
reselect
RESELECT
rbias
ARRAYFIRE
SKETCHMAP
CONJGRAD
POINTWISE
pointwise
MOL
Renormalized
bivariate
Frechet
Weibull
bilinear
metastable
priori
kj
mol
kcal
Hartree
eV
fs
amu
optimizers
proj
config
colvartools
mklib
newcv
pdbreader
NVE
SMAP
COSINUS
NOSTRETCH
TANH
tanh
qquad
molfile
picoseconds
orthorhombic
Giorgino's
curvilinear
txt
negativebias
myfes
myhisto
Quapp