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Matej Lexa
nested
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57855df4bb371214bee00b91591309b5ff76eeae
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Created with Raphaël 2.2.0
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WIP: input sequence windows
feature/custom-…
feature/custom-discovery-tool
merging trfs with overlap
change branch name
Merge branch 'tidecluster' into 'feature/custom-discovery-tool'
push docker config file
tidecluster
tidecluster
removed forgotten print
fix incorrect sequence crop; trf overlaps
Merge branch 'tidecluster' into 'feature/custom-discovery-tool'
delete tmp file
add LTR_Finder directory
docker install tidecluster in conda
module registration
created tideclester output generator
created tidecluster tool interface, output object
python3.10 compatible dependencies
no longer sorting nester output; yaml safe load
Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
documentation; added forgotten typing
Update README.md
documentation updates
fix bug in soloLtrs module
documentation
rename BaseOutputGenerator -> OutputGeneratorInterface
not running blastx if no TEs found
nester: added console log; dependency_resolver: crash prevention
Update Dockerfile
docker-update
docker-update
update files for docker
fixed typo in installation script
remove static method
resolving discovery tool in Gene
updated readme with new class name
executor sorting new elements
code style; added module based colors to config template
add updated scripts
add_new_module_…
add_new_module_test
add python scripts
Subbranch establishig
grapher: added autorange
Delete gydb_arh_chdcr.fa.psq
Delete gydb_arh_chdcr.fa.pin
Delete gydb_arh_chdcr.fa.phr
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