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Matej Lexa
nested
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493e3575db0fd04ccfe2b7656cb9fbdad3c9bb6b
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Created with Raphaël 2.2.0
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Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
removed backwards edges in scoring
grapher: added autosize
Delete gydb_arh_chdcr.fa.pto
Delete gydb_arh_chdcr.fa.ptf
Delete gydb_arh_chdcr.fa.pot
Delete gydb_arh_chdcr.fa.pdb
Updated protein domain db files
Updated protein domain db files
grapher: refactor; scaling table
grapher: fixed couple bugs
cleanup round 4
cleanup round 3
cleanup round 2
Merge branch 'master' of https://gitlab.fi.muni.cz/lexa/nested
code cleanup round 1
grapher: added to installer as nested-grapher command
grapher: removing sequences without specified length
grapher: handling missing modules
Updated protein domain db files
grapher: nicer code
grapher: added csv table export; graph page title
grapher: styling and scaling for multiple sequences
grapher: added table; styling
grapher: axis styling
grapher: added TE family graph; merged graphs into one html file
grapher: styling
grapher: added TE specific metrics
grapher: WIP coverage graph
grapher: change in data structure, fixed coverage computation
grapher: compute coverage for all modules per sequence
grapher: parsing input gffs
added TE annotation; changed variable names according to conventions
modules: added mite filtering; delete tmp files at the end
modules: fixed sketcher; fixed bug in output generators
modules: miteFinder fix output id
WIP modules: minor fixes; added plotly
WIP modules: updated config template; fixed mite finder module; minor changes in output
modules: fixed wrong sequence range in gff; fixed indexing in solo ltr; minor refactor
WIP modules: added miteFinder module
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