Commits · 59e6b8092bc04ebe8bb46c63ecdba133c3a8bbd4 · Matej Lexa / nested

Nov 19, 2023
- fix incorrect sequence crop; trf overlaps · 59e6b809
  Ivan Vanat authored Nov 19, 2023
  
  59e6b809
Nov 03, 2023
- Merge branch 'tidecluster' into 'feature/custom-discovery-tool' · e147ac77
  Marie Krátká authored Nov 03, 2023
```
Tidecluster

See merge request !27
```
  e147ac77
Oct 08, 2023
- delete tmp file · 55f45b29
  Marie Krátká authored Oct 08, 2023
  
  55f45b29
- add LTR_Finder directory · e40d0420
  Marie Krátká authored Oct 08, 2023
  
  e40d0420
- docker install tidecluster in conda · 6a42de66
  Marie Krátká authored Oct 08, 2023
  
  6a42de66
Oct 07, 2023
- module registration · 77c6d34e
  Marie Krátká authored Oct 07, 2023
  
  77c6d34e
- created tideclester output generator · 959b68f9
  Marie Krátká authored Oct 07, 2023
  
  959b68f9
- created tidecluster tool interface, output object · 473127e9
  Marie Krátká authored Oct 07, 2023
  
  473127e9
Oct 06, 2023
- python3.10 compatible dependencies · 31378861
  Marie Krátká authored Oct 06, 2023
  
  31378861
Mar 31, 2023
- no longer sorting nester output; yaml safe load · 085222de
  Ivan Vanat authored Mar 31, 2023
  
  085222de
Dec 11, 2022
- Merge branch 'feature/custom-discovery-tool' of... · ed8cd094
  Ivan Vanat authored Dec 11, 2022
```
Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
```
  ed8cd094
- documentation; added forgotten typing · 10bc30f8
  Ivan Vanat authored Dec 11, 2022
  
  10bc30f8
Dec 09, 2022
- Update README.md · decd0c57
  Ivan Vanát authored Dec 09, 2022
  
  decd0c57
Dec 05, 2022
- documentation updates · a0f1ba8b
  Ivan Vanat authored Dec 05, 2022
  
  a0f1ba8b
Nov 27, 2022
- fix bug in soloLtrs module · aefd50d6
  Ivan Vanat authored Nov 27, 2022
  
  aefd50d6
- documentation · aef715bc
  Ivan Vanat authored Nov 27, 2022
  
  aef715bc
- rename BaseOutputGenerator -> OutputGeneratorInterface · b71e4bcf
  Ivan Vanat authored Nov 27, 2022
  
  b71e4bcf
Nov 19, 2022
- not running blastx if no TEs found · f1071024
  Ivan Vanat authored Nov 19, 2022
  
  f1071024
- nester: added console log; dependency_resolver: crash prevention · 628192ab
  Ivan Vanat authored Nov 19, 2022
  
  628192ab
Nov 18, 2022
- fixed typo in installation script · e377c7bc
  Ivan Vanat authored Nov 18, 2022
  
  e377c7bc
- remove static method · f7f3dadc
  Ivan Vanat authored Nov 18, 2022
  
  f7f3dadc
- resolving discovery tool in Gene · da65efa6
  Ivan Vanat authored Nov 18, 2022
  
  da65efa6
Nov 11, 2022
- updated readme with new class name · 1812af0c
  Ivan Vanat authored Nov 11, 2022
  
  1812af0c
- executor sorting new elements · 58d4e352
  Ivan Vanat authored Nov 11, 2022
  
  58d4e352
- code style; added module based colors to config template · a317cd32
  Ivan Vanat authored Nov 11, 2022
  
  a317cd32
Nov 04, 2022
- grapher: added autorange · c6e4f9cf
  Ivan Vanat authored Nov 04, 2022
  
  c6e4f9cf
Oct 31, 2022
- Delete gydb_arh_chdcr.fa.psq · 42077f05
  Ivan Vanát authored Oct 31, 2022
  
  42077f05
- Delete gydb_arh_chdcr.fa.pin · 4b3cad41
  Ivan Vanát authored Oct 31, 2022
  
  4b3cad41
- Delete gydb_arh_chdcr.fa.phr · 63e25310
  Ivan Vanát authored Oct 31, 2022
  
  63e25310
- graph refactored · 50a1b585
  Ivan Vanat authored Oct 31, 2022
  
  50a1b585
Oct 29, 2022
- Fixes in README · 10a23b63
  Ivan Vanát authored Oct 29, 2022
  
  10a23b63
- Updated new module implementation section in README · 6d0dff8e
  Ivan Vanát authored Oct 29, 2022
  
  6d0dff8e
Oct 28, 2022
- added new line in solo ltrs spliced fasta · d778fd2e
  Ivan Vanat authored Oct 28, 2022
  
  d778fd2e
Oct 27, 2022
- Update config_template.yml · 7686416c
  Pavel Jedlicka authored Oct 27, 2022
  
  7686416c
Oct 20, 2022
- beta version of new module implementation tutorial · 704390b2
  Ivan Vanat authored Oct 20, 2022
  
  704390b2
- Updated readme for ltr discovery tool implementation · b3786c08
  Ivan Vanat authored Oct 20, 2022
  
  b3786c08
- added module order cmd argument · 1386b970
  Ivan Vanat authored Oct 20, 2022
  
  1386b970
- Merge branch 'feature/custom-discovery-tool' of... · 1e89d66d
  Ivan Vanat authored Oct 20, 2022
```
Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
```
  1e89d66d
- removed backwards edges in scoring · f8db12f9
  Ivan Vanat authored Oct 20, 2022
  
  f8db12f9
- grapher: added autosize · d3580c53
  Ivan Vanat authored Oct 20, 2022
  
  d3580c53