Loading nested/entities/base_element.py +1 −1 Original line number Diff line number Diff line #!/usr/bin/env python3 import math from typing import List, Optional, Dict, Union, NoReturn, Type from collections import Iterable from collections.abc import Iterable from nested.utils import intervals Loading setup.py +7 −8 Original line number Diff line number Diff line # this version is just copied from a different branch, probably won't work as is from setuptools import setup, find_packages import nested Loading @@ -9,18 +10,16 @@ setup( author=nested.__author__, packages=find_packages(), install_requires=[ 'bcbio-gff==0.6.4', 'biopython==1.70', 'click==6.7', 'networkx==2.1', 'PyYAML==3.12', 'plotly==5.10.0' 'bcbio-gff>=0.6.4', 'biopython>=1.70', 'click>=6.7', 'networkx>=2.7', 'PyYAML>=3.13,<6.0' ], entry_points={ 'console_scripts': [ 'nested-generator=nested.cli.generator:main', 'nested-nester=nested.cli.nester:main', 'nested-grapher=nested.nester_grapher.grapher:main' 'nested-nester=nested.cli.nester:main' ] } ) Loading
nested/entities/base_element.py +1 −1 Original line number Diff line number Diff line #!/usr/bin/env python3 import math from typing import List, Optional, Dict, Union, NoReturn, Type from collections import Iterable from collections.abc import Iterable from nested.utils import intervals Loading
setup.py +7 −8 Original line number Diff line number Diff line # this version is just copied from a different branch, probably won't work as is from setuptools import setup, find_packages import nested Loading @@ -9,18 +10,16 @@ setup( author=nested.__author__, packages=find_packages(), install_requires=[ 'bcbio-gff==0.6.4', 'biopython==1.70', 'click==6.7', 'networkx==2.1', 'PyYAML==3.12', 'plotly==5.10.0' 'bcbio-gff>=0.6.4', 'biopython>=1.70', 'click>=6.7', 'networkx>=2.7', 'PyYAML>=3.13,<6.0' ], entry_points={ 'console_scripts': [ 'nested-generator=nested.cli.generator:main', 'nested-nester=nested.cli.nester:main', 'nested-grapher=nested.nester_grapher.grapher:main' 'nested-nester=nested.cli.nester:main' ] } )