Commits · 1ba3eff41184f15f362a5705e896989e46f136ac · Matej Lexa / nested

Nov 10, 2022
- add updated scripts · 1ba3eff4
  jedlickap authored Nov 10, 2022
  
  1ba3eff4
Nov 09, 2022
- add python scripts · 343f63fc
  jedlickap authored Nov 09, 2022
  
  343f63fc
- Subbranch establishig · 4807aefb
  jedlickap authored Nov 09, 2022
  
  4807aefb
Oct 20, 2022
- beta version of new module implementation tutorial · 704390b2
  Ivan Vanat authored Oct 20, 2022
  
  704390b2
- Updated readme for ltr discovery tool implementation · b3786c08
  Ivan Vanat authored Oct 20, 2022
  
  b3786c08
- added module order cmd argument · 1386b970
  Ivan Vanat authored Oct 20, 2022
  
  1386b970
- Merge branch 'feature/custom-discovery-tool' of... · 1e89d66d
  Ivan Vanat authored Oct 20, 2022
  1e89d66d
- removed backwards edges in scoring · f8db12f9
  Ivan Vanat authored Oct 20, 2022
  
  f8db12f9
- grapher: added autosize · d3580c53
  Ivan Vanat authored Oct 20, 2022
  
  d3580c53
- Delete gydb_arh_chdcr.fa.pto · c0974211
  Pavel Jedlicka authored Oct 20, 2022
  
  c0974211
- Delete gydb_arh_chdcr.fa.ptf · bd7c904b
  Pavel Jedlicka authored Oct 20, 2022
  
  bd7c904b
- Delete gydb_arh_chdcr.fa.pot · 23aa7818
  Pavel Jedlicka authored Oct 20, 2022
  
  23aa7818
- Delete gydb_arh_chdcr.fa.pdb · d44dc291
  Pavel Jedlicka authored Oct 20, 2022
  
  d44dc291
- Updated protein domain db files · c4829765
  jedlickap authored Oct 20, 2022
  
  c4829765
- Updated protein domain db files · f79a9607
  jedlickap authored Oct 20, 2022
  
  f79a9607
Oct 17, 2022
- grapher: refactor; scaling table · 9327bf90
  Ivan Vanat authored Oct 17, 2022
  
  9327bf90
Oct 16, 2022
- grapher: fixed couple bugs · 7a14ec99
  Ivan Vanat authored Oct 16, 2022
  
  7a14ec99
Oct 13, 2022
- cleanup round 4 · cb1d0fe5
  Ivan Vanat authored Oct 13, 2022
  
  cb1d0fe5
- cleanup round 3 · 5c50561c
  Ivan Vanat authored Oct 13, 2022
  
  5c50561c
- cleanup round 2 · 0265737d
  Ivan Vanat authored Oct 13, 2022
  
  0265737d
Oct 09, 2022
- code cleanup round 1 · 1c54c320
  Ivan Vanat authored Oct 09, 2022
  
  1c54c320
Oct 07, 2022
- grapher: added to installer as nested-grapher command · 2dc1b080
  Ivan Vanat authored Oct 07, 2022
  
  2dc1b080
- grapher: removing sequences without specified length · 2d1d7dcd
  Ivan Vanat authored Oct 07, 2022
  
  2d1d7dcd
- grapher: handling missing modules · 44c9ed96
  Ivan Vanat authored Oct 07, 2022
  
  44c9ed96
Sep 29, 2022
- grapher: nicer code · 941b0dcf
  Ivan Vanat authored Sep 29, 2022
  
  941b0dcf
- grapher: added csv table export; graph page title · 47321976
  Ivan Vanat authored Sep 29, 2022
  
  47321976
Sep 25, 2022
- grapher: styling and scaling for multiple sequences · a37f8393
  Ivan Vanat authored Sep 25, 2022
  
  a37f8393
Sep 24, 2022
- grapher: added table; styling · 58db6701
  Ivan Vanat authored Sep 24, 2022
  
  58db6701
Sep 23, 2022
- grapher: axis styling · da79a37b
  Ivan Vanat authored Sep 23, 2022
  
  da79a37b
- grapher: added TE family graph; merged graphs into one html file · 511500af
  Ivan Vanat authored Sep 23, 2022
  
  511500af
Sep 16, 2022
- grapher: styling · a14c83aa
  Ivan Vanat authored Sep 16, 2022
  
  a14c83aa
Sep 14, 2022
- grapher: added TE specific metrics · 30a10163
  Ivan Vanat authored Sep 14, 2022
  
  30a10163
Sep 13, 2022
- grapher: WIP coverage graph · 84da15f7
  Ivan Vanat authored Sep 13, 2022
  
  84da15f7
Sep 12, 2022
- grapher: change in data structure, fixed coverage computation · 9aa6e981
  Ivan Vanat authored Sep 12, 2022
  
  9aa6e981
- grapher: compute coverage for all modules per sequence · b471cb51
  Ivan Vanat authored Sep 12, 2022
  
  b471cb51
Sep 11, 2022
- grapher: parsing input gffs · f3930788
  Ivan Vanat authored Sep 11, 2022
  
  f3930788
Sep 10, 2022
- added TE annotation; changed variable names according to conventions · 28369412
  Ivan Vanat authored Sep 10, 2022
  
  28369412
Sep 09, 2022
- modules: added mite filtering; delete tmp files at the end · c67330fc
  Ivan Vanat authored Sep 09, 2022
  
  c67330fc
- modules: fixed sketcher; fixed bug in output generators · 9328f294
  Ivan Vanat authored Sep 09, 2022
  
  9328f294
- modules: miteFinder fix output id · 4e77d509
  Ivan Vanat authored Sep 09, 2022
  
  4e77d509