Commit 4e77d509 authored by Ivan Vanat's avatar Ivan Vanat
Browse files

modules: miteFinder fix output id

parent cf40a4aa

nested/output/output_generators/mite_output_generator.py

+12 −10
Original line number Diff line number Diff line
@@ -10,7 +10,8 @@ class MiteOutputGenerator(BaseOutputGenerator): 
        super().__init__(directory)



    def generate_output(self, output_object: MiteOutputObject) -> NoReturn:

        with open("{}/{}/{}_mite.gff".format(self.directory, output_object.sequence_id, output_object.sequence_id), 'w+')\

        with open("{}/{}/{}_mite.gff".format(self.directory, output_object.sequence_id, output_object.sequence_id),

                  'w+') \

                as gff:

            i = 0

            gff.write("##gff-version 3\n")
@@ -22,7 +23,6 @@ class MiteOutputGenerator(BaseOutputGenerator): 
                          + ".\t.\t.\t"

                          + "ID=mite_" + str(i)

                          + '\n')

                i += 1



                for feature in mite.features.keys():

                    gff.write(output_object.sequence_id + "\t"
@@ -33,3 +33,5 @@ class MiteOutputGenerator(BaseOutputGenerator): 
                              + "ID={}_{};".format(feature, str(i))

                              + "Parent=mite_{}".format(str(i))

                              + '\n')



                i += 1