Added a user guide.

Makefile

 SUBMAKES_REQUIRED=theme/mu logo/mu
-SUBMAKES_MISCELLANEOUS=example/mu
+SUBMAKES_MISCELLANEOUS=guide/mu example/mu
 SUBMAKES=$(SUBMAKES_REQUIRED) $(SUBMAKES_MISCELLANEOUS)
 .PHONY: all complete clean dist dist-implode implode \
-	install uninstall $(SUBMAKES)
+	install uninstall $(SUBMAKES_REQUIRED)
+
 BASETHEMEFILE=beamerthemefibeamer.sty
 OTHERTHEMEFILES=theme/mu/*.sty
 THEMEFILES=$(BASETHEMEFILE) $(OTHERTHEMEFILES)
@@ -10,33 +11,30 @@ LOGOSOURCES=logo/mu/*.svg
 LOGOS=logo/mu/*.pdf logo/mu/*.eps
 DTXFILES=*.dtx theme/mu/*.dtx
 INSFILES=*.ins theme/mu/*.ins
-MAKES=theme/mu/Makefile logo/mu/Makefile Makefile
-USEREXAMPLES=example/mu/econ-lualatex.tex \
-	example/mu/econ-pdflatex.tex example/mu/fi-lualatex.tex \
-	example/mu/fi-pdflatex.tex example/mu/fsps-lualatex.tex \
-	example/mu/fsps-pdflatex.tex  example/mu/fss-lualatex.tex \
-	example/mu/fss-pdflatex.tex example/mu/law-lualatex.tex \
-	example/mu/law-pdflatex.tex  example/mu/med-lualatex.tex \
-	example/mu/med-pdflatex.tex example/mu/ped-lualatex.tex \
-	example/mu/ped-pdflatex.tex  example/mu/phil-lualatex.tex \
-	example/mu/phil-pdflatex.tex example/mu/sci-lualatex.tex \
-	example/mu/sci-pdflatex.tex example/mu/econ-lualatex.pdf \
-	example/mu/econ-pdflatex.pdf  example/mu/fi-lualatex.pdf \
+MAKES=guide/mu/Makefile theme/mu/Makefile logo/mu/Makefile Makefile
+USEREXAMPLES=example/mu/econ-lualatex.pdf \
+	example/mu/econ-pdflatex.pdf example/mu/fi-lualatex.pdf \
 	example/mu/fi-pdflatex.pdf example/mu/fsps-lualatex.pdf \
-	example/mu/fsps-pdflatex.pdf  example/mu/fss-lualatex.pdf \
+	example/mu/fsps-pdflatex.pdf example/mu/fss-lualatex.pdf \
 	example/mu/fss-pdflatex.pdf example/mu/law-lualatex.pdf \
-	example/mu/law-pdflatex.pdf  example/mu/med-lualatex.pdf \
+	example/mu/law-pdflatex.pdf example/mu/med-lualatex.pdf \
 	example/mu/med-pdflatex.pdf example/mu/ped-lualatex.pdf \
 	example/mu/ped-pdflatex.pdf example/mu/phil-lualatex.pdf \
 	example/mu/phil-pdflatex.pdf example/mu/sci-lualatex.pdf \
-	example/mu/sci-pdflatex.pdf \
-	example/mu/resources/jabberwocky-dark.pdf \
-	example/mu/resources/jabberwocky-light.pdf
+	example/mu/sci-pdflatex.pdf
 DEVEXAMPLES=logo/EXAMPLE/DESCRIPTION logo/mu/DESCRIPTION \
 	logo/DESCRIPTION theme/EXAMPLE/DESCRIPTION theme/mu/DESCRIPTION \
 	theme/DESCRIPTION example/DESCRIPTION example/EXAMPLE/DESCRIPTION \
-	example/mu/DESCRIPTION example/mu/resources/DESCRIPTION
+	example/mu/DESCRIPTION example/mu/resources/DESCRIPTION \
+	guide/DESCRIPTION guide/EXAMPLE/DESCRIPTION \
+	guide/mu/DESCRIPTION guide/mu/resources/DESCRIPTION
 EXAMPLES=$(USEREXAMPLES) $(DEVEXAMPLES)
+MISCELLANEOUS=guide/mu/guide.bib \
+	guide/mu/guide.dtx guide/mu/*.ins guide/mu/resources/cog.pdf \
+  guide/mu/resources/vader.pdf guide/mu/resources/yoda.pdf \
+	$(USEREXAMPLES:.pdf=.tex) \
+	example/mu/resources/jabberwocky-dark.pdf \
+	example/mu/resources/jabberwocky-light.pdf
 RESOURCES=$(THEMEFILES) $(LOGOS)
 SOURCES=$(DTXFILES) $(INSFILES) LICENSE.tex
 AUXFILES=fibeamer.aux fibeamer.log fibeamer.toc fibeamer.ind \
@@ -44,8 +42,11 @@ AUXFILES=fibeamer.aux fibeamer.log fibeamer.toc fibeamer.ind \
 	fibeamer.glo fibeamer.hd
 MANUAL=fibeamer.pdf
 PDFSOURCES=fibeamer.dtx
-PDFS=$(MANUAL) $(USEREXAMPLES)
-DOCS=$(MANUAL) README
+GUIDES=guide/mu/econ.pdf guide/mu/fi.pdf guide/mu/fsps.pdf \
+	guide/mu/fss.pdf guide/mu/law.pdf guide/mu/med.pdf \
+	guide/mu/ped.pdf guide/mu/phil.pdf guide/mu/sci.pdf
+PDFS=$(MANUAL) $(GUIDES) $(USEREXAMPLES)
+DOCS=$(MANUAL) $(GUIDES) README
 VERSION=VERSION.tex
 TDSARCHIVE=fibeamer.tds.zip
 CTANARCHIVE=fibeamer.ctan.zip
@@ -65,8 +66,8 @@ all: $(SUBMAKES_REQUIRED)
 complete: all $(SUBMAKES)
 	make $(PDFS) clean
 
-# This pseudo-target calls a submakefile
-$(SUBMAKES):
+# This pseudo-target calls a submakefile.
+$(SUBMAKES_REQUIRED):
 	make -C $@ all
 
 # This pseudo-target creates the distribution archive.
@@ -77,33 +78,39 @@ dist: dist-implode complete
 $(BASETHEMEFILE): fibeamer.ins fibeamer.dtx
 	xetex $<
 
+# This target typesets the guides and user examples.
+$(GUIDES) $(USEREXAMPLES): $(RESOURCES)
+	make -BC $(dir $@)
+
 # This target typesets the technical documentation.
 $(MANUAL): $(DTXFILES)
 	pdflatex $<
-	makeindex -s gind.ist $(basename $@)
+	makeindex -s gind.ist                       $(basename $@)
 	makeindex -s gglo.ist -o $(basename $@).gls $(basename $@).glo
 	pdflatex $<
 	pdflatex $<
 
-# This target generates a TeX directory structure file
+# This target generates a TeX directory structure file.
 $(TDSARCHIVE):
 	DIR=`mktemp -d` && \
 	make install to="$$DIR" nohash=true && \
 	(cd "$$DIR" && zip -r -v -nw $@ *) && \
 	mv "$$DIR"/$@ $@ && rm -rf "$$DIR"
 
-# This target generates a distribution file
+# This target generates a distribution file.
 $(DISTARCHIVE): $(SOURCES) $(RESOURCES) $(MAKES) \
-	$(DOCS) $(PDFSOURCES) $(EXAMPLES) $(VERSION) $(LOGOSOURCES)
+	$(DOCS) $(PDFSOURCES) $(MISCELLANEOUS) $(EXAMPLES) $(VERSION) \
+	$(LOGOSOURCES)
 	DIR=`mktemp -d` && \
 	cp --verbose $(TDSARCHIVE) "$$DIR" && \
 	cp --parents --verbose $^ "$$DIR" && \
 	(cd "$$DIR" && zip -r -v -nw $@ *) && \
 	mv "$$DIR"/$@ . && rm -rf "$$DIR"
 
-# This target generates a CTAN distribution file
-$(CTANARCHIVE): $(SOURCES) $(MAKES) $(LOGOSOURCES) $(DOCS) \
-	$(EXAMPLES) $(VERSION)
+# This target generates a CTAN distribution file.
+$(CTANARCHIVE): $(SOURCES) $(MAKES) $(EXAMPLES) \
+	$(MISCELLANEOUS) $(DOCS) $(VERSION) \
+	$(LOGOSOURCES)
 	DIR=`mktemp -d` && mkdir -p "$$DIR/fibeamer" && \
 	cp --verbose $(TDSARCHIVE) "$$DIR" && \
 	cp --parents --verbose $^ "$$DIR/fibeamer" && \

example/mu/DESCRIPTION

+This directory contains example documents for the various faculties
+of the Masaryk University.

fibeamer.dtx

@@ -14,7 +14,7 @@
 \usepackage[T1]{fontenc} % use 8bit fonts
 \emergencystretch 2dd
 \usepackage{hypdoc}
-\usepackage[protrusion]{microtype}
+\usepackage{microtype}
 \usepackage{ragged2e}
 
 % Making paragraphs numbered
@@ -49,11 +49,18 @@
 %<*class>
 \NeedsTeXFormat{LaTeX2e}
 % Define `\fibeamer@version` and store it in the `VERSION.tex` file \fi
-\def\fibeamer@version{2015/11/18 v1.0.2 fibeamer MU beamer theme}
+\def\fibeamer@version{2015/11/20 v1.0.3 fibeamer MU beamer theme}
 % {\newwrite\f\openout\f=VERSION\write\f{\fibeamer@version}\closeout\f}
 %
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %
+% \changes{v1.0.3} {2015/11/20}{The example documents from the
+%   \texttt{example} directory and the user guide from the
+%   \texttt{guide} directory are now a part of the CTAN archive.
+%   [VN]}
+%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%
 % \title{The beamer theme for the typesetting of thesis defense
 %   presentations at the Masaryk University in Brno}
 % \author{Vít Novotný}
@@ -81,10 +88,9 @@
 % \subsection{The \texttt{fonts} option}
 % \begin{macro}{\iffibeamer@fonts}
 % The |fonts| option instructs the package to set up the
-% combination of the font families of Carlito, Arev, Iwona, Dsfont
-% and DejaVu Sans Mono for the typesetting of roman, italic or
-% monospaced text and mathematics. This option is enabled by
-% default.
+% combination of the font families of Carlito, Arev, Iwona, Dsfont,
+% and DejaVu for the typesetting of text and mathematics. This
+% option is enabled by default.
 %    \begin{macrocode}
 \ProvidesPackage{fibeamer/beamerthemefibeamer}[\fibeamer@version]
 \newif\iffibeamer@fonts
@@ -158,6 +164,7 @@
 %    \end{macrocode}
 % \end{macro}
 % \begin{macro}{\fibeamer@basePath}
+% \subsection{The \texttt{basePath} option}
 % The \marg{\texttt{basePath}=path} pair sets the \textit{path}
 % containing the package files. The \textit{path} is prepended to
 % every other path (|\fibeamer@logopath| and |\fibeamer@themePath|)
@@ -335,22 +342,22 @@
 %     compound conditionals.
 %   \item\textsf{ifxetex}, \textsf{ifluatex} -- These packages are
 %     used to detect the used \TeX\ engine.
-%   \item\textsf{lmodern} -- The Latin Modern font family is used
-%     as a fallback for missing glyphs.
+%   \item\textsf{lmodern} -- The Latin Modern font family is used as a
+%     fallback for missing glyphs.
 %   \item\textsf{carlito} -- The Carlito font family is used as the
 %     primary text and math font face.
-%   \item\textsf{arevmath} -- The Arev math font family is used for
+%   \item\textsf{arevmath} -- The Arev Sans math font family is used for
 %     various symbols and greek alphabet.
 %   \item\textsf{iwona} -- The Iwona font family is used for large
-%     mathAsymbols.
-%   \item\textsf{DejaVuSansMono} -- The DejaVu Sans Mono font
-%     family is used for the typesetting of monospaced text.
+%     math symbols.
+%   \item\textsf{dejavu} -- The DejaVu Sans Mono font family is
+%     used for the typesetting of monospaced text.
 %   \item\textsf{setspace} -- This package is used to adjust the
 %     leading to 115 \%.
 %   \item\textsf{fontenc} -- This package is used to set the font
 %     encoding to Cork. This package is only used outside the
 %     \Hologo{XeTeX} and \Hologo{LuaTeX} engines.
-%   \item\textsf{fontenc} -- This package is used to load fonts.
+%   \item\textsf{fontspec} -- This package is used to load fonts.
 %     This package is only used with the \Hologo{XeTeX} and
 %     \Hologo{LuaTeX} engines.
 % \end{itemize}

guide/DESCRIPTION

+This directory can contain subdirectories with the user guides of
+various universities.

guide/EXAMPLE/DESCRIPTION

+This is an empty directory. You can rename it to match the name of
+your university and place the respective user guides in here.

guide/mu/DESCRIPTION

+This directory contains the user guides of the Masaryk University
+(Brno, Czech Republic).

guide/mu/Makefile

+PDFFILES=fi.pdf sci.pdf ped.pdf med.pdf fss.pdf fsps.pdf phil.pdf \
+	law.pdf econ.pdf
+TEX=pdflatex -shell-escape
+.PHONY: all clean
+all: clean
+	make $(PDFFILES) clean
+
+# This target typesets a PDF file.
+%.pdf: %.tex guide.bib
+	$(TEX) $(basename $@).tex
+	biber  $(basename $@)
+	$(TEX) $(basename $@).tex
+
+# This target prepares a TeX file.
+%.tex: %.ins guide.dtx
+	xetex $<
+
+# This target removes any auxiliary files.
+clean:
+	rm -f *.aux *.log *.out *.toc *.lot *.lof *.bbl *.blg *.pyg \
+		*.bcf *-blx.bib *.run.xml *.tex
+	rm -rf _minted-*
+
+# This target removes any auxiliary files and the output files.
+implode: clean
+	rm -f $(PDFFILES)

guide/mu/econ.ins

+\input ../../LICENSE
+\generate{\file{econ.tex}{\from{guide.dtx}{econ}}}
+\endbatchfile

guide/mu/fi.ins

+\input ../../LICENSE
+\generate{\file{fi.tex}{\from{guide.dtx}{fi}}}
+\endbatchfile

guide/mu/fsps.ins

+\input ../../LICENSE
+\generate{\file{fsps.tex}{\from{guide.dtx}{fsps}}}
+\endbatchfile

guide/mu/fss.ins

+\input ../../LICENSE
+\generate{\file{fss.tex}{\from{guide.dtx}{fss}}}
+\endbatchfile

guide/mu/guide.bib

+@book{latex,
+  title={\LaTeX},
+  month={March},
+  year={2013},
+  publisher={Wikibooks.org},
+  url={http://en.wikibooks.org/wiki/LaTeX},
+  urldate={2015-05-03}}
+@manual{veryshortlatex,
+  title={The very short guide to typesetting with \LaTeX{}},
+  month={January},
+  year={2013},
+  publisher={Silmaril Consultants},
+  url={http://tug.ctan.org/info/latex-veryshortguide/veryshortguide.pdf},
+  urldate={2015-05-03}}
+@manual{shortlatex,
+  title={A short introduction to \LaTeX{}},
+  month={December},
+  year={1995},
+  author={Allin Cottrell},
+  url={http://ricardo.ecn.wfu.edu/~cottrell/ecn297/latex_tut.pdf},
+  urldate={2015-05-03}}
+@manual{longlatex,
+  author={Tobias Oetiker and Hubert Partl and Irene Hyna and Elisabeth Schlegl},
+  title={The Not So Short Introduction to \LaTeXe\ or \LaTeXe\ in
+    157 minutes},
+  year={2014},
+  month={October},
+  url={http://tobi.oetiker.ch/lshort/lshort.pdf},
+  urldate={2015-05-03}}
+@book{rybicka03,
+  author={Jiří Rybička},
+  edition={3},
+  title={\LaTeX\ pro začátečníky},
+  publisher={Konvoj},
+  place={Brno},
+  year={2003},
+  isbn={80-7302-049-1}}
+@manual{satrapa11,
+  author={Pavel Satrapa},
+  title={\LaTeX\ pro pragmatiky},
+  place={Liberec},
+  year={2011},
+  month={June},
+  url={http://mirror.ctan.org/info/czech/latex-pro-pragmatiky/latex-pro-pragmatiky.pdf},
+  urldate={2015-05-03}}
+@manual{novotny15,
+  author={Vít Novotný},
+  title={The beamer theme for the typesetting of thesis defense
+    presentations at the Masaryk University in Brno},
+  place={Brno},
+  year={2015},
+  url={http://mirrors.ctan.org/macros/latex/contrib/beamer-contrib/fibeamer/fibeamer.pdf},
+  urldate={2015-11-20}}

guide/mu/guide.dtx

+%    \begin{macrocode}
+\documentclass[color,table,nolot,nolof]{fithesis3}
+\usepackage[english]{babel}
+\usepackage{hologo}
+\usepackage{fancyvrb}
+\usepackage{minted}
+\usepackage{ltxcmds}
+\usepackage{tabularx}
+\usepackage[
+  backend=biber,
+  style=numeric,
+  citestyle=numeric-comp,
+  sorting=none,
+  sortlocale=auto
+]{biblatex}
+\addbibresource{guide.bib}
+\usepackage[os=win]{menukeys}
+\makeatletter
+\thesissetup{
+  title=A fibeamer user guide for the \thesis@english@facultyName,
+  TeXtitle=A \textit{fibeamer} user guide\medskip\\\Large for the
+    \thesis@english@facultyName,
+  type=bc,
+  department=Department of Computer Graphics and Design,
+  programme=Applied Informatics,
+  field=Typesetting,
+  titleEn=\thesis@title,
+  departmentEn=\thesis@department,
+  programmeEn=\thesis@programme,
+  fieldEn=\thesis@field,
+  author=Vít Novotný,
+  advisor={Doc.\ RNDr.\ Petr Sojka, Ph.D.},
+  assignment={},
+  abstract={\textsf{Fibeamer} is a theme for the \textsf{beamer}
+    \LaTeX{} document class and is intended to be used for the
+    preparation of thesis defense presentations across the
+    faculties of the \thesis@english@universityName. This document
+    describes the installation of the \textsf{fibeamer} theme, its
+    configuration, and its use.},
+  keywords={thesis, typesetting, LaTeX},
+  TeXkeywords={thesis, typesetting, \LaTeX{}},
+  keywordsEn=\thesis@keywords,
+  TeXkeywordsEn=\thesis@TeXkeywords,
+  abstractEn=\thesis@abstract,
+  faculty=\jobname,
+  autoLayout=false}
+\makeatother
+\begin{document}
+  \makeatletter\thesis@preamble\makeatother
+  \chapter{Introduction}
+  To use the \textsf{fibeamer} beamer theme, you can use an online
+  \LaTeX{} editor, such as Overleaf%
+  \footnote{Overleaf \textsf{fibeamer} templates are located at
+  \url{http://www.overleaf.com/gallery/tagged/muni}.},
+  which allows you to skip the installation described in Section
+  \ref{sec:install} completely.
+  
+%<*fi>
+  {\makeatletter\newcount\thguide@tl\expandafter\thguide@tl\the
+  \year\if\month<7\advance\thguide@tl-1\fi\makeatother
+  Another way to avoid installation is to use any public-access
+  computer at the \makeatletter\thesis@english@facultyName
+  \makeatother\ that runs Microsoft Windows. By running
+  \begin{center}
+    \makeatletter\menu[,]{Start,Programs,Document Tools,TeXLive%
+    \the\thguide@tl\ namapovani na T}\makeatother
+  \end{center} you can mount the faculty \TeX\ Live installation to
+  drive \verb'T:\'. Consequently, you can either use the command
+  line to run commands from the \TeX{} distribution by running
+  \begin{center}
+    \makeatletter\menu[,]{Start,Programs,Document Tools,TeXLive%
+    \the\thguide@tl\ CMD}\makeatother
+  \end{center}
+  or you can use the graphical \TeX\ editor \TeX Works by running
+  \begin{center}
+    \makeatletter\menu[,]{Start,Programs,Document Tools,TeXWorks+%
+    TeXLive\the\thguide@tl}\makeatother
+  \end{center}}
+
+  Yet another way to avoid installation is to either connect to the
+  Linux server at \url{aisa.fi.muni.cz} over SSH, or use any
+  public-access computer at the
+  \makeatletter\thesis@english@facultyName\makeatother\ that runs
+  Linux or Mac OS, and load the faculty \TeX\ Live installation by
+  issuing the \texttt{module add texlive} command on the command
+  line. If you choose this approach, you can also skip the entire
+  Section \ref{sec:install}, although a certain degree of
+  proficiency in working with a Unix operating system is required
+  compared to the other methods.
+%</fi>
+  \makeatletter
+    % This macro kerns an icon next to a word.
+    \def\thguide@iconkern{\kern.2ex}
+  \makeatother
+%<*sci>
+  \makeatletter
+    % This macro typesets the URL of a math.muni server.
+    \def\thguide@server#1{%
+      \includegraphics[height=.5em]{resources/#1.pdf}%
+      \thguide@iconkern\url{#1.math.muni.cz}}
+  \makeatother
+  Another way to avoid installation is to use the faculty \TeX\ Live
+  installation by connecting to the Linux server at
+  \makeatletter\thguide@server{yoda}\makeatother\ or
+  \makeatletter\thguide@server{vader}\makeatother\ over SSH
+  (through port 22222) or over the remote desktop
+  protocol\footnote{
+    For more information about connecting through the remote
+    desktip protocol, see
+    \url{http://www.math.muni.cz/aktuality/347-vzdaleny-pristup-yoda-vader.html}.}
+  (through port 13556), or to use any public-access computer at the
+  \makeatletter\thesis@english@facultyName\makeatother\ that runs
+  Linux. If you choose this approach, you can also skip this entire
+  section, although a certain degree of proficiency in working with
+  a Unix operating system is required compared to the first method.
+%</sci>
+  
+  \section{Installation}\label{sec:install}
+  \subsection{Installing a \TeX{} distribution}
+  If you decided not to use a public \TeX{} distribution, you will
+  need to install one locally before proceeding further. A \TeX{}
+  distribution contains tools and packages that are going to help
+  you with preparing and typesetting your \LaTeX\ documents.
+
+  The two major \TeX{} distributions that you can install are
+  Mik\TeX\footnote{Mik\TeX\ can be acquired from
+  \url{http://miktex.org/2.9/setup}.}, which can be used with the
+  Microsoft Windows operating system, and \TeX\ Live\footnote{%
+  \TeX\ Live can be acquired from
+  \url{http://www.tug.org/texlive}.}, which can be installed on
+  both Unix and Windows operating systems. The advantages of
+  Mik\TeX\ include refined graphical user interface and the ability
+  to install new packages on the fly.
+  
+  Along with Mik\TeX{}, you will also need to install a Perl
+  interpreter, such as Strawberry Perl\footnote{Strawberry Perl can
+  be downloaded from \url{http://strawberryperl.com/}.}. \TeX\ Live
+  installs a Perl interpreter by default.
+
+  \subsection{Installing packages}\label{sec:req-packages}
+  In order to function properly, \textsf{fibeamer} needs the
+  following packages packages to be installed in your \TeX\
+  distribution: \textsf{ifthen}, \textsf{ifxetex},
+  \textsf{ifluatex}, \textsf{lm}, \textsf{carlito}, \textsf{arev},
+  \textsf{iwona}, \textsf{dejavu}, \textsf{setspace},
+  \textsf{fontenc}, \textsf{fontspec}, \textsf{beamer},
+  \textsf{fibeamer}.
+
+  {\makeatletter %% A placeholder string macro
+  \def\thguide@placeholder#1{$\langle$\textit{#1}$\rangle$} 
+  If you performed a full installation of \TeX\ Live, you should
+  already have all the required packages installed. If you are
+  using a partial installation of \TeX\ Live, you can use the
+  \texttt{tlmgr} command-line tool by executing \texttt{tlmgr
+  install} \thguide@placeholder{pkgname}, where
+  \thguide@placeholder{pkgname} is the name of the package you wish
+  to install. In some cases, \TeX\ Live may assign a different name
+  to a package. To find out the \TeX\ Live name of a package, open
+  the
+  \texttt{http://www.ctan.org/pkg/}\thguide@placeholder{pkgname}
+  webpage in a web browser. It should contain the following text:
+  \begin{center}
+    Contained in \TeX\ Live as \thguide@placeholder{texlivename}
+  \end{center}
+  where \thguide@placeholder{texlivename} corresponds to the \TeX\
+  Live name of the package. Use this name instead of
+  \thguide@placeholder{pkgname} with \texttt{tlmgr}.
+  Alternatively, you can download the packages manually from
+  \texttt{http://www.ctan.org\discretionary{/}{/}{/}pkg/}%
+  \thguide@placeholder{pkgname} and extract them into the
+  \texttt{texmf/} directory located in your user home directory.
+  Mind that the packages themselves may depend on other
+  packages; if you are using a partial installation of \TeX\ Live,
+  you will have to resolve these dependencies manually by
+  inspecting the documentation of each package.
+
+  If you use Mik\TeX\ and you enabled the \textit{over the air
+  installation of packages} during the installation, Mik\TeX\ will
+  automatically download all the required packages, when you first
+  typeset a \textsf{fibeamer} document. If you didn't enable this
+  feature, you will need to enter the Mik\TeX\ package manager by
+  running
+  \begin{center}
+    \menu[,]{Start,MikTeX,MikTeX Package Manager (Admin)}
+  \end{center}
+  and download the packages manually through the user interface.
+  In some cases, Mik\TeX\ may assign a different name to a 
+  package. To find out the Mik\TeX\ name of a package, open the
+  \texttt{http://www.ctan.org\discretionary{/}{/}{/}pkg/}%
+  \thguide@placeholder{pkgname} webpage in a web browser,
+  where \thguide@placeholder{pkgname} is the name of the
+  package you wish to install. It should contain the following
+  text:
+  \begin{center}
+    Contained in Mik\TeX\ as \thguide@placeholder{miktexname}
+  \end{center}
+  where \thguide@placeholder{miktexname} corresponds to the
+  Mik\TeX\ name of the package. If you still can't find the
+  package, try synchronizing the package database by selecting
+  \begin{center}
+    \menu[,]{Repository,Synchronize}
+  \end{center}
+  from the menu bar of the Mik\TeX\ package manager. Mind that the
+  packages themselves may depend on other packages; if you disabled
+  the over the air installation of packages, you will have to
+  resolve these dependencies manually by inspecting the
+  documentation of each package.}
+
+  If you wish to use a newer version of \textsf{fibeamer} than the
+  one that is available in your \TeX\ distribution, you should
+  download a file named \texttt{fibeamer.tds.zip} containing the
+  version of the package you wish to use and place it in a root
+  directory that is recognized by your \TeX\ distribution. In
+  \TeX\ Live\footnote{For more information about the \TeX\ Live root
+  directories, see
+  \url{http://www.tug.org/texlive/doc/texlive-en/texlive-en.html\#x1-110002.3},
+  Chapter 2.3.}, one of such directories is the \texttt{texmf/}
+  folder in your user home directory. In Mik\TeX\footnote{
+  For more information about the \TeX\ Live root
+  directories, see 
+  \url{http://docs.miktex.org/manual/localadditions.html}.},
+  the list of recognized root directories can be gleaned by
+  running
+  \begin{center}
+    \menu[,]{Start,MikTeX,MikTeX Options (Admin),Roots}
+  \end{center}
+
+  \section{Picking a \TeX\ engine}
+  There are several programs, called \TeX\ engines, that you can
+  use to typeset \textsf{fibeamer} \LaTeX{} source files into
+  displayable PDF documents. The ones we will discuss are
+  \hologo{pdfTeX} and \Hologo{LuaTeX}.
+  
+  \Hologo{pdfTeX} is the more conservative choice and most \TeX\
+  editors use \hologo{pdfTeX} as the default \TeX\ engine. The main
+  advantage \Hologo{LuaTeX} over \hologo{pdfTeX} for a
+  \textsf{fibeamer} user is the ability to use standard OpenType
+  and TrueType fonts installed on your system, whereas
+  \hologo{pdfTeX} is confined to the fonts installed in your \TeX\
+  distribution.
+  
+  If the ability to use arbitrary fonts within your documents
+  interests you, Chapter 3 of the \textsf{fontspec} package
+  manual\footnote{The \textsf{fontspec} package manual is available
+  at \url{http://mirrors.ctan.org/macros/latex/contrib/fontspec/fontspec.pdf}.}
+  should provide you with the relevant information. If you are
+  only going to use the fonts present in the \TeX{} distribution or
+  if you do not intend to change the preset \textsf{fibeamer}
+  fonts at all, you can safely use \hologo{pdfTeX}, which is
+  currently also considerably faster than \Hologo{LuaTeX}.
+
+  \section{Creating and typesetting a \textsf{fibeamer} document}
+  Before using the \textsf{fibeamer} theme, it is useful to be
+  familiar with the \LaTeX{} typesetting system. A good way to get
+  started is to read one of the introductory texts in English
+  \cite{veryshortlatex,shortlatex,longlatex,latex} or in Czech
+  \cite{rybicka03,satrapa11}. Taking one of the \textit{FI:PB029},
+  \textit{PřF:M5751}, or \textit{FF:PLIN028} courses taught at
+  the \makeatletter\thesis@english@universityName\makeatother\ is
+  also helpful.
+
+  To become familiar with \textsf{fibeamer}, you are encouraged to
+  inspect the example \textsf{fibeamer} documents named
+  \makeatletter
+  \texttt{\thesis@university-\thesis@faculty-pdflatex.pdf} and
+  \texttt{\thesis@university-\thesis@faculty-lualatex.pdf} as well
+  as their \LaTeX{} source files that are named
+  \texttt{\thesis@university-\thesis@faculty-pdflatex.tex} and
+  \texttt{\thesis@university-\thesis@faculty-lualatex.tex} that are
+  distributed along with the package inside the \texttt{example/}
+  directory\footnote{The example \textsf{fibeamer} documents are
+  also available online at
+  \url{https://www.ctan.org/tex-archive/macros/latex/contrib/beamer-contrib/fibeamer/example/mu}.}.
+  By modifying and by typesetting these \LaTeX{} source files using
+  either the \hologo{pdfTeX} or the \Hologo{LuaTeX} engine, you can
+  quickly gain a working knowledge of \LaTeX{} and use these source
+  files as the basis for your thesis. To typeset the example
+  documents, you need to download the \texttt{resources/} directory
+  as well, as it contains vector images used in the examples.
+  
+  If you are using an online editor, such as Overleaf
+  \footnote{Overleaf \textsf{fibeamer} templates are located at
+  \url{http://www.overleaf.com/gallery/tagged/muni}.}, \LaTeX{}
+  source files will be typeset automatically, as you edit them. The
+  \TeX{} engine can be selected inside the
+  \includegraphics[height=1.3ex]{resources/cog.pdf}\makeatletter
+  \thguide@iconkern\makeatother project settings.
+
+  If you are using a graphical \TeX{} editor, such as \TeX
+  works\footnote{\TeX works can be downloaded from
+  \url{http://www.tug.org/texworks/}.}, you can typeset a \LaTeX{}
+  source file by opening the source file from within the editor and
+  running either the \hologo{pdfLaTeX} or \Hologo{LuaLaTeX}
+  (depending on your choice of \TeX\ engine) command from the task
+  bar. The command needs to be executed at least twice.
+
+  If you are using the command line, you can typeset \LaTeX{}
+  source files by running either \texttt{pdflatex
+  \textit{name.tex}} or \texttt{lualatex
+  \textit{name.tex}} (depending on your choice of \TeX\
+  engine), where \texttt{\textit{name.tex}} corresponds to the name
+  of a \LaTeX\ source file. In the case of the two aforementioned
+  example files, the corresponding commands would be:
+  \begin{center}\makeatletter
+  \texttt{pdflatex \thesis@university-\thesis@faculty-pdflatex.tex}
+\\\texttt{lualatex \thesis@university-\thesis@faculty-lualatex.tex}
+  \makeatother\end{center}
+  The command needs to be executed from within the directory, where
+  the \LaTeX\ source file is located. In Windows, the command line
+  can be opened in a directory by holding down the \keys{Shift} key
+  and by clicking the right mouse button while hovering the cursor
+  over a directory. Select the \menu{Open Command Window Here}
+  option in the context menu that opens shortly afterwards.  The
+  command also needs to be executed at least twice.
+
+  Beside Overleaf and \TeX works, any text editor can be used to
+  modify \LaTeX{} source files.
+
+  \chapter{Configuration}
+  A \textsf{fibeamer} \LaTeX{} source file should begin as follows:
+  \begin{minted}{latex}
+\documentclass{beamer}
+\usetheme[option1, option2, ..., optionN]{fibeamer}
+  \end{minted}
+  The following list summarizes the options that are recognized by
+  the \textsf{fibeamer} theme and their meaning. Options that are
+  enabled by default are \textit{set in italics}.
+
+  {\makeatletter
+  % This macro formats a default class option.
+  \def\thguide@default{\itshape}
+  % This macro formats a class option.
+  \let\thguide@itemfmt\textbf
+  \begin{description}
+    \item[faculty=$\langle${name}$\rangle$]
+      This option changes the color theme based on the selected
+      faculty. To choose the color theme of the
+      \thesis@english@facultyName, use
+      {\thguide@itemfmt\thesis@faculty} as the
+      $\langle$name$\rangle$.
+    \item[\thguide@default fonts]
+      This option sets up the combination of the font families of
+      Carlito, Arev, Iwona, Dsfont, and DejaVu for the typesetting
+      of text and mathematics.
+    \item[nofonts]
+      This option prevents \textsf{fibeamer} from setting up the
+      fonts. The user must set the fonts manually in the preamble
+      of the document.
+%<*fi>
+
+      The \thesis@english@facultyName\ has licensed the Comenia
+      font family. If you wish to use it in your thesis, you should
+      contact Doc.\ RNDr.\ Petr Sojka, Ph.D.
+      
+      If you are typesetting your thesis on a public-access
+      computer at the \thesis@english@facultyName\ or on the
+      \url{aisa.fi.muni.cz} Linux server, you can use the
+      commercial Math Time mathematical font family,
+%</fi>
+%<*sci>
+
+      If you are typesetting your thesis on a public-access
+      computer at the \thesis@english@facultyName\ that runs Linux
+      or on either the \thguide@server{yoda} or
+      \thguide@server{vader} Linux server, you can also use the
+      commercial Math Time mathematical font family,
+%</sci>
+%<*sci,fi> 
+      which goes well with the \TeX\ Gyre Termes text font family.
+      To use Math Time and \TeX\ Gyre Termes within your thesis,
+      the preamble of your document should look as follows:
+      \begin{minted}{latex}
+\documentclass{beamer}
+\usetheme[nofonts, ...]{fibeamer}
+\usepackage[utf8]{inputenc}
+\usepackage[T1]{fontenc}
+\usepackage{tgtermes}
+\usepackage{mathtime}
+%% Here goes the rest of the document.
+      \end{minted}
+%</sci,fi>
+    \item[\thguide@default microtype]
+      This option sets up microtypographic extensions\footnote{
+        For more information about the \TeX\ engine
+        microtypographic extensions, see
+        \url{http://mirrors.ctan.org/macros/latex/contrib/microtype/microtype.pdf}.
+      }, which results in visually more pleasing paragraphs of
+      text.
+    \item[nomicrotype]
+      This option prevents \textsf{fibeamer} from setting up
+      microtypographic extensions. 
+  \end{description}
+  The complete list of the package options can be found in Section
+  2 of the technical documentation of the \textsf{fibeamer}
+  class \cite{novotny15}.}
+
+  \makeatletter\thesis@postamble\makeatother
+  \tolerance=300\emergencystretch=1em
+  \printbibliography[heading=bibintoc]
+\end{document}
+%    \end{macrocode}

guide/mu/law.ins

+\input ../../LICENSE
+\generate{\file{law.tex}{\from{guide.dtx}{law}}}
+\endbatchfile

guide/mu/med.ins

+\input ../../LICENSE
+\generate{\file{med.tex}{\from{guide.dtx}{med}}}
+\endbatchfile

guide/mu/ped.ins

+\input ../../LICENSE
+\generate{\file{ped.tex}{\from{guide.dtx}{ped}}}
+\endbatchfile

guide/mu/phil.ins

+\input ../../LICENSE
+\generate{\file{phil.tex}{\from{guide.dtx}{phil}}}
+\endbatchfile

guide/mu/resources/DESCRIPTION

+This directory contains resources for the guides.