Commits · master · Cem Emre Akbas / annotations_merging · GitLab

Jun 15, 2020
- Merge branch 'CMV-SIM+' into master_main · b1166a00
  Vladimír Ulman authored Jun 15, 2020
  
  b1166a00
- Merge branch 'versionThatKeepSmallMarkers' into dsakldja · 91ce893b
  Vladimír Ulman authored Jun 15, 2020
  
  91ce893b
- FIX: .gitignore updated · ccd355a4
  Vladimír Ulman authored Jun 15, 2020
  
  ccd355a4
- ADD: scripts2 folder on how to generate jobs files (and merge cases) for the 2D SIM+ CMV story · cbf227c2
  Vladimír Ulman authored Jun 15, 2020
  
  cbf227c2
- ADD: results on the analysis of how much can be eroded from the original TRa markers · fca387b6
  Vladimír Ulman authored Jun 15, 2020
  
  fca387b6
- COS: pimped the findMaxDilation code and service script · 43ac2b80
  Vladimír Ulman authored Jun 15, 2020
  
  43ac2b80
- ADD: erodeFixedRadius (after findMaxDilation, Dilation should be Erosion), · 1fd78b11
  Vladimír Ulman authored Jun 15, 2020
  1fd78b11
- ADD: does not erode makers initially/originally smaller than given threshold · 3872ab82
  Vladimír Ulman authored Jun 15, 2020
  
  3872ab82
- BUGFIX: in calculating 'howMuchIsLeft' · 9a09ab93
  Vladimir Ulman authored Jun 09, 2020 and Vladimír Ulman committed Jun 15, 2020
  
  9a09ab93
- EXPERIMENT: determining max erosion across video sequences · d046dfb4
  Vladimir Ulman authored Jun 09, 2020 and Vladimír Ulman committed Jun 15, 2020
  
  d046dfb4
- ADD: implementation of reduceMarkers() · 8eec0566
  Vladimir Ulman authored Jun 09, 2020 and Vladimír Ulman committed Jun 15, 2020
  
  8eec0566
- initial commit · 417ebd81
  Vladimir Ulman authored Jun 09, 2020 and Vladimír Ulman committed Jun 15, 2020
  417ebd81
- Merge branch 'fixedSubsetOfInputs' into master_main · 4030daac
  Vladimír Ulman authored Jun 15, 2020
  
  4030daac
Sep 10, 2019
- ADD: prepareGivenVideo_intoParts.py - create multiple size-limit folders with merge tasks, · d3a5dbb1
  Vladimir Ulman (@it4i.cz) authored Sep 10, 2019
  d3a5dbb1
Sep 05, 2019
- ADD: linux static-build binary of of_changeformat to compress tiffs · b1c8e241
  Vladimir Ulman (@it4i.cz) authored Sep 05, 2019
  
  b1c8e241
- ADD: prepareGivenVideo: command to compress tiffs (WARN: HARDCODED PATH!) · 3e19da9e
  Vladimír Ulman authored Sep 05, 2019
  
  3e19da9e
- ADD: prepareGivenVideo: command to produce separators in the logged outputs · bb4177f8
  Vladimír Ulman authored Sep 05, 2019
  
  bb4177f8
- ADD: script to create merging cases, each video in its own folder · ac81cb44
  Vladimír Ulman authored Sep 05, 2019
  
  ac81cb44
Sep 04, 2019
- CHG,ADD: extra param reporting the size of the fixed set of inputs, · 0e4e0a56
  Vladimír Ulman authored Sep 04, 2019
  0e4e0a56
- CHG: updated to the newer folder structure · 4e1faefa
  Vladimír Ulman authored Sep 04, 2019
  
  4e1faefa
Dec 04, 2018
- don't list apple s**t and gvim swp files in git gui · 4359eddc
  Vladimír Ulman authored Dec 04, 2018
  
  4359eddc
Oct 17, 2018
- ADDED: Timer to measure&store the total execution time · 998fc96c
  cememreakbas authored Oct 17, 2018
  
  998fc96c
- SIMPLE algorithm and related scripts for creating&saving the fusion results... · 4ff95902
  cememreakbas authored Oct 17, 2018
  4ff95902
Oct 16, 2018
- All STAPLE scripts merged into one single ready-to-use script · ffb797c2
  cememreakbas authored Oct 16, 2018
  
  ffb797c2
Oct 09, 2018
- CHG: processGivenVIdeo is now using Fiji->segmentation->SEg measure plugin · cc62330a
  Vladimír Ulman authored Oct 09, 2018
  
  cc62330a
- FIX: createScripts calculates intersection of available GT seg and tra timepoints, · 3b7facb6
  Vladimír Ulman authored Oct 09, 2018
  3b7facb6
- FIX: createScripts.cmd was adding fake 0th time point (no duplicates the last timepoint) · 0e993d9e
  Vladimír Ulman authored Oct 09, 2018
  
  0e993d9e
Sep 28, 2018
- ADD: scripts that create scripts to run the fusion tasks · 06073b60
  Vladimír Ulman authored Sep 28, 2018
  
  06073b60
- FIX: SEG folder in testingData moved to the correct place · 937cb85c
  Vladimír Ulman authored Sep 28, 2018
  
  937cb85c
- FIX: handles results with exactly the same SEG, leaves note in log_1 file · fbd501a4
  Vladimír Ulman authored Sep 28, 2018
  
  fbd501a4
- BUGFIXES: higher SEG is better (was lower): · f74a431f
  Vladimír Ulman authored Sep 28, 2018
  f74a431f
- ADD: processVideo maintains given number of best results · 94fdf161
  Vladimír Ulman authored Sep 28, 2018
  
  94fdf161
- Merge branch 'testingData' · 080e6b0b
  Vladimír Ulman authored Sep 28, 2018
  
  080e6b0b
- ADD: reference data for calculating SEG measure (so that the test run can be complete) · 07974bcc
  Vladimír Ulman authored Sep 28, 2018
  
  07974bcc
- CHG: adapted to the new params of the processGivenVideo.py (10 12 -> 10-12) · cdbfc573
  Vladimír Ulman authored Sep 28, 2018
  
  cdbfc573
- ADD: both Fiji commands and their output is logged in extra files inside respective output folders · 136b384e
  Vladimír Ulman authored Sep 28, 2018
  
  136b384e
- ADD: SEG value is explicitly extracted into a float variable · 428adb78
  Vladimír Ulman authored Sep 28, 2018
  
  428adb78
- CHG: processGivenVideo takes single param (e.g.) "4,5,6-10" instead of two params "4 10", · 1121b9e1
  Vladimír Ulman authored Sep 28, 2018
  1121b9e1
Sep 04, 2018
- ADD: testing dataset incl. cmds to execute tests · e505017b
  Vladimír Ulman authored Sep 04, 2018
  
  e505017b
Jun 22, 2018
- Fixed a bug in creating directories for outFolder. · bfc1e39e
  Cem Emre Akbas authored Jun 22, 2018
  
  bfc1e39e