Commit 4e1faefa authored by Vladimír Ulman's avatar Vladimír Ulman
Browse files

CHG: updated to the newer folder structure

parent 4359eddc

scripts/createScripts.cmd

+6 −1
Original line number Diff line number Diff line
@@ -39,7 +39,12 @@ for gtFolder in ../gtReference/*; do 
			echo "$gtFolder/$video PROBLEM: NO INTERSECTING TIMEPOINTS BETWEEN GT-SEG AND GT-TRA"

		else

			gtFolderBasename=`basename $gtFolder`

			echo python3 $1 $2 ../fusionOutputs "${gtFolderBasename}-$video" "$timePointsBoth" $gtFolder/${video}_GT `ls -d ../userResults/*/$gtFolderBasename/${video}_RES` > "${gtFolderBasename}-${video}.cmd"



			# wrap the individual folder names with double quotes (to make it over folder names with spaces or other "crazy" characters)

			fixedFiles=`ls -d ../userResults/$gtFolderBasename/fixed/*/${video}_RES | { while read i; do printf "\"%s\" " "$i"; done }`

			  varFiles=`ls -d ../userResults/$gtFolderBasename/*/${video}_RES       | { while read i; do printf "\"%s\" " "$i"; done }`



			echo python3 $1 $2 ../fusionOutputs "${gtFolderBasename}-$video" "$timePointsBoth" $gtFolder/${video}_GT "$fixedFiles" "$varFiles" > "${gtFolderBasename}-${video}.cmd"

		fi

	done

done

scripts/taskFolderStructure.txt

+7 −7
Original line number Diff line number Diff line
@@ -10,11 +10,14 @@ gtReference/ 
  PhC-C2DL-PSC



userResults/

  clean.cmd

  isbi001

  isbi005

  anyInputFolderName

  anyAnotherInputFolderName

  ...

  isbi926

  anyYetAnotherInputFolderName

  fixed/anyInputFolderName

  fixed/anyAnotherInputFolderName

  fixed/...

  fixed/anyYetAnotherInputFolderName



binariesAndScripts/

  createScripts.cmd
@@ -26,6 +29,3 @@ Start with: 


cd binariesAndScripts

. createScripts.cmd pathTo_processGivenVideo.py pathToFijiBinary
 


. someOfTheCreatedScripts

...