project: ci: make microservices start on different ports

The docker-compose was using the jar files to run the microservices
without passing the -dev argument. Changed the names of
application-dev.yml files to application.yml. This allows for the docker
to start services on different ports. Also moved the resources/
directories to src/main.

Signed-off-by: Martin Zatovic <m.zatovic1@gmail.com>