M    src/tools/imageinfo.cpp

M    CMakeLists.txt		- searches now also for Apple's .dylibs
M    src/cellChr.cpp		- on Apple: #include<values.h> -> #include<float.h>
M    src/scheduler.cpp	- ditto

(note: sh shell cannot handle variable substrings, unlike bash!)

M    scripts/finalize.sh

Get max, krome GPL licence, vypisuje radek s "identifikatorem" MAXX
M    src/tools/getMax.cpp

Skript preskakuje lic. texty a hleda radek s MAXX,
aby ziskal co potrebuje vedet pro svou praci;
A taky vola mitogen namisto mitopacqu...
M    scripts/finalize.sh

LOCK file se jmenuje Mitogen (bylo Mitopacq)
M    src/scheduler.cpp

M    src/main.cpp

M    CMakeLists.txt
M    src/cell.cpp
M    src/cell.h
M    src/cellChr.cpp
M    src/cellSOFA.cpp
M    src/cellScm.cpp
M    src/cell_00_Samplephase.cpp
M    src/cell_01_Prophase.cpp
M    src/cell_02_Metaphase.cpp
M    src/cell_03_Anaphase.cpp
M    src/cell_04_Telophase.cpp
M    src/cell_05_Cytokinesis.cpp
M    src/cell_06_G1Phase.cpp
M    src/cell_07_SPhase.cpp
M    src/cell_08_G2Phase.cpp
M    src/dots.cpp
M    src/dots.h
M    src/macros.h
M    src/main.cpp
M    src/molecule.cpp
M    src/molecule.h
M    src/scheduler.cpp
M    src/scheduler.h
M    src/settings.h
M    src/toolbox/bp_lists.h
M    src/toolbox/cell_movement.h
M    src/toolbox/collisions.cpp
M    src/toolbox/collisions.h
M    src/toolbox/deformations.cpp
M    src/toolbox/deformations.h
M    src/toolbox/finalpreview.cpp
M    src/toolbox/finalpreview.h
M    src/toolbox/flowfields.h
A    src/toolbox/hungarian/README
M    src/toolbox/importexport.h
M    src/toolbox/perlin.h
M    src/toolbox/rnd_generators.cpp
M    src/toolbox/rnd_generators.h
M    src/toolbox/shape_rendering.cpp
M    src/toolbox/shape_rendering.h
M    src/toolbox/user_abort.cpp
M    src/toolbox/user_abort.h
M    src/types.h

It is intentionally called a displacement, instead of velocity, to stress the fact
that the class does not deal with time variable at all.

Added one more state handling of a real number generator (because of the disp. distro).

Added UseCorrectedUniformDistribution() for the turning angle distribution which
actually creates not uniform distribution, but after drawing random samples from it,
the produced distribution is some-what nearly uniform (quite unlike from the one
produced with UseUniformDistribution()).

Added RandomWalk::ReadyToStartSimulation() indicator for those who are not sure...
M    toolbox/randWalk.h


Adjusted to provide similar trajectory data as the real example.
M    toolbox/walks.cc

Now produces:
+ series of images with trajectories of individual walks
+ single image of labeled trajectories
+ histogram of finishing positions of all trajectories
+ data for the MSD analysis in the same format as is used in the analyzer of real sequences

M    toolbox/walks.cc

M    toolbox/walks.cc

Functions are provided also for standard turning ang. distributions.
Inteface has changed...
M    toolbox/randWalk.h

Sample controlling program.
M    toolbox/walks.cc

A    toolbox/randWalk.h

And a sample program showing how to use it.
A    toolbox/walks.cc

(used to be depending only on time which produces exactly the same sequences
when executed at the very same time, e.g., from a script)

M    rnd_generators.cpp

M    src/toolbox/cell_movement.cpp

Speed-up tuning for MovsMask determination.
M    src/cellScm.cpp

Re-adjusted to meet the real original data again.
M    TMI/config-711extVOI-highSNR.ini

M    src/toolbox/bp_lists.cpp

Some report has decenlty changed.
M    src/cell.cpp

Some more tweaks for the TMI paper.
M    src/cellScm.cpp

M    src/cell_02_Metaphase.cpp

M    src/cell.h
M    src/cellChr.cpp

And made use of them where appropriate...
M    src/cell_00_Samplephase.cpp
M    src/cell_01_Prophase.cpp
M    src/cell_02_Metaphase.cpp
M    src/cell_03_Anaphase.cpp
M    src/cell_04_Telophase.cpp
M    src/cell_05_Cytokinesis.cpp