Added support for the SOFA crippled export mode --
a mode, in which T000 shape files (cell, nucl* masks) are read but (only) chromatin and deformation magnitures are generated new. The purpose of this mode is to create and export ``new'' cells without the need to re-mesh them in the SOFA. That's why the mask/shape stuff is re-read while all the rest is created new. M ISBI2015/config-smallVOI-lowSNR.ini M src/cell.cpp
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