A decent move towards the r36 comment:

"
Added a snapshot of changes for the first successfully working single-cell
testing implementation of MitoPacq+SOFA.

In the comming revisions, we should arrive to an official MitoPacq+SOFA version
in the main SVN trunk that shall produce the same results as the snapshot above.
"

The simulator is starting to be slightly sensitive to the GTGEN_WITH_SOFA directives.

M    scheduler.cpp			- creates a little less changing pnArray with SOFA
M    toolbox/bp_lists.cpp	- renders only up to scm*OuterBPNumber points