A new repository for MitoGen framework has just been created ;-)

A    CMakeLists.txt
A    Doxyfile
A    config
A    config/config-711extVOI-highSNR.ini
A    config/config-middleVOI-highSNR.ini
A    config/config-middleVOI-lowSNR.ini
A    config/config-smallVOI-highSNR.ini
A    config/config-smallVOI-lowSNR.ini
A    images
AM   images/initial_mask_7-11_extended.ics
AM   images/initial_mask_after_005_extended.ics
AM   images/initial_mask_after_015_extended.ics
A    psf
AM   psf/sample_psf.ics
A    src
A    src/cell.cpp
A    src/cell.h
A    src/cellChr.cpp
A    src/cellSOFA.cpp
A    src/cellScm.cpp
A    src/cell_00_Samplephase.cpp
A    src/cell_01_Prophase.cpp
A    src/cell_02_Metaphase.cpp
A    src/cell_03_Anaphase.cpp
A    src/cell_04_Telophase.cpp
A    src/cell_05_Cytokinesis.cpp
A    src/cell_06_G1Phase.cpp
A    src/cell_07_SPhase.cpp
A    src/cell_08_G2Phase.cpp
A    src/dots.cpp
A    src/dots.h
A    src/macros.h
A    src/main.cpp
A    src/molecule.cpp
A    src/molecule.h
A    src/scheduler.cpp
A    src/scheduler.h
A    src/settings.h
A    src/toolbox
A    src/toolbox/bp_lists.cpp
A    src/toolbox/bp_lists.h
A    src/toolbox/cell_movement.cpp
A    src/toolbox/cell_movement.h
A    src/toolbox/collisions.cpp
A    src/toolbox/collisions.h
A    src/toolbox/deformations.cpp
A    src/toolbox/deformations.h
A    src/toolbox/finalpreview.cpp
A    src/toolbox/finalpreview.h
A    src/toolbox/flowfields.cpp
A    src/toolbox/flowfields.h
A    src/toolbox/hungarian
A    src/toolbox/hungarian/Assignment.cpp
A    src/toolbox/hungarian/Assignment.h
A    src/toolbox/hungarian/BipartiteGraph.cpp
A    src/toolbox/hungarian/BipartiteGraph.h
A    src/toolbox/hungarian/Hungarian.cpp
A    src/toolbox/hungarian/Hungarian.h
A    src/toolbox/hungarian/Matrix.h
A    src/toolbox/hungarian/README
A    src/toolbox/importexport.cpp
A    src/toolbox/importexport.h
A    src/toolbox/perlin.cpp
A    src/toolbox/perlin.h
A    src/toolbox/rnd_generators.cpp
A    src/toolbox/rnd_generators.h
A    src/toolbox/shape_rendering.cpp
A    src/toolbox/shape_rendering.h
A    src/toolbox/user_abort.cpp
A    src/toolbox/user_abort.h
A    src/types.h
A    tools
A    tools/getMax.cpp
A    tools/scripts
AM   tools/scripts/finalize.sh