Commit c8f022ea authored by Vladimír Ulman's avatar Vladimír Ulman
Browse files

ISBI_Generator, decent adjustment in the output path and filenames...

parent 1fd1e2c1

src/main_Generator.cpp

+11 −11
Original line number Diff line number Diff line
@@ -22,7 +22,7 @@ ActiveMesh mesh; 
std::vector< std::vector<int> > tipOffsets;



bool LoadNewMesh(const char* path,const int ID,const int fileNo);

int  RenderMesh(const char* path,int fileNo);

int  RenderMesh(const char* path,const int ID,int fileNo);



int main(int argc,char **argv)

{
@@ -42,7 +42,7 @@ int main(int argc,char **argv) 


	//determine the first time point to start with

	int i=0;

	if (argc == 5) i=atoi(argv[4]);

	if (argc >= 5) i=atoi(argv[4]);



	int framesToGoHome=999999999;

	if (argc == 6) framesToGoHome=atoi(argv[5]);
@@ -79,7 +79,7 @@ int main(int argc,char **argv) 
			std::cout << f << ": normals   #: " << mesh.Ftree[f].norm.size() << "\n";

		}



		RenderMesh(argv[2],i);

		RenderMesh(argv[2],ID,i);

		++i;

		--framesToGoHome;

	}
@@ -209,7 +209,7 @@ bool LoadNewMesh(const char* path,const int ID,const int fileNo) 


#define DO_PHASE_II_AND_III

#define DO_ANISOTROPIC_OUTPUT

int RenderMesh(const char* path,int fileNo)

int RenderMesh(const char* path,const int ID,int fileNo)

{

	//setup isotropic(!) image for mask-output of the simulated cell

	i3d::Image3d<i3d::GRAY16> mask;
@@ -231,7 +231,7 @@ int RenderMesh(const char* path,int fileNo) 


	std::cout << "exporting isotropic mask #" << fileNo << "\n";

	char fileName[1024];

	sprintf(fileName,"%s/ISOmask_t%03d.tif",path,fileNo);

	sprintf(fileName,"%s/ID%d_afterTM/ISOmask_t%03d.tif",path,ID,fileNo);

	mask.SaveImage(fileName);



	//updates the texture fl. points
@@ -284,11 +284,11 @@ int RenderMesh(const char* path,int fileNo) 
/*

		//uncomment if you want to see the FF for the cell body

		char n[1024];

		sprintf(n,"%s/new_vx_%03d.ics",path,fileNo);

		sprintf(n,"%s/ID%d_afterTM/new_vx_%03d.ics",path,ID,fileNo);

		FF.x->SaveImage(n);

		sprintf(n,"%s/new_vy_%03d.ics",path,fileNo);

		sprintf(n,"%s/ID%d_afterTM/new_vy_%03d.ics",path,ID,fileNo);

		FF.y->SaveImage(n);

		sprintf(n,"%s/new_vz_%03d.ics",path,fileNo);

		sprintf(n,"%s/ID%d_afterTM/new_vz_%03d.ics",path,ID,fileNo);

		FF.z->SaveImage(n);

*/
@@ -316,7 +316,7 @@ int RenderMesh(const char* path,int fileNo) 
	//i3d::Image3d<i3d::GRAY16> texture;

	//mesh.RenderOneTimeTexture(mask,texture);



	sprintf(fileName,"%s/phantom_t%03d.tif",path,fileNo);

	sprintf(fileName,"%s/ID%d_afterTM/phantom_t%03d.tif",path,ID,fileNo);

	texture.SaveImage(fileName);



#ifdef DO_PHASE_II_AND_III
@@ -341,12 +341,12 @@ int RenderMesh(const char* path,int fileNo) 


	//save the texture and that's it for texture image

	std::cout << "exporting texture #" << fileNo << "\n";

	sprintf(fileName,"%s/texture_t%03d.tif",path,fileNo);

	sprintf(fileName,"%s/ID%d_afterTM/texture_t%03d.tif",path,ID,fileNo);

	texture.SaveImage(fileName);





	std::cout << "exporting mask #" << fileNo << "\n";

	sprintf(fileName,"%s/mask_t%03d.tif",path,fileNo);

	sprintf(fileName,"%s/ID%d_afterTM/mask_t%03d.tif",path,ID,fileNo);

#ifdef DO_PHASE_II_AND_III

 #ifdef DO_ANISOTROPIC_OUTPUT

	//re-render (!, instead of resampling) also the mask before exporting