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Merge branch 'v2.0' into v2.0-gpu-balance
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- CHANGES/v2.0.txt 49 additions, 10 deletionsCHANGES/v2.0.txt
- developer-doc/Doxyfile.in 1753 additions, 735 deletionsdeveloper-doc/Doxyfile.in
- developer-doc/extract 2 additions, 1 deletiondeveloper-doc/extract
- patches/gromacs-4.5.5.config 7 additions, 0 deletionspatches/gromacs-4.5.5.config
- patches/gromacs-4.6.3.config 8 additions, 0 deletionspatches/gromacs-4.6.3.config
- patches/lammps-6Apr13.config 11 additions, 0 deletionspatches/lammps-6Apr13.config
- patches/namd-2.8.config 7 additions, 0 deletionspatches/namd-2.8.config
- patches/namd-2.9.config 13 additions, 0 deletionspatches/namd-2.9.config
- patches/patch.sh 40 additions, 25 deletionspatches/patch.sh
- patches/qespresso-5.0.2.config 6 additions, 0 deletionspatches/qespresso-5.0.2.config
- src/bias/MovingRestraint.cpp 4 additions, 3 deletionssrc/bias/MovingRestraint.cpp
- src/colvar/Angle.cpp 24 additions, 2 deletionssrc/colvar/Angle.cpp
- src/colvar/Distance.cpp 55 additions, 0 deletionssrc/colvar/Distance.cpp
- src/colvar/Gyration.cpp 1 addition, 1 deletionsrc/colvar/Gyration.cpp
- src/config/Makefile 3 additions, 1 deletionsrc/config/Makefile
- src/core/PlumedMain.cpp 1 addition, 1 deletionsrc/core/PlumedMain.cpp
- src/generic/Read.cpp 31 additions, 14 deletionssrc/generic/Read.cpp
- src/lib/Makefile 16 additions, 7 deletionssrc/lib/Makefile
- src/maketools/cleanlinks.sh 9 additions, 0 deletionssrc/maketools/cleanlinks.sh
- src/maketools/make.module 18 additions, 19 deletionssrc/maketools/make.module
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