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Merge branch 'master' into tree-refactoring
Conflicts: src/basic/PlumedMain.cpp
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- regtest/rt41/Makefile 1 addition, 0 deletionsregtest/rt41/Makefile
- regtest/rt41/colvar.reference 29 additions, 0 deletionsregtest/rt41/colvar.reference
- regtest/rt41/config 2 additions, 0 deletionsregtest/rt41/config
- regtest/rt41/input_colvar 547 additions, 0 deletionsregtest/rt41/input_colvar
- regtest/rt41/plumed.dat 3 additions, 0 deletionsregtest/rt41/plumed.dat
- src/basic/ActionAtomistic.cpp 1 addition, 0 deletionssrc/basic/ActionAtomistic.cpp
- src/basic/ColvarEnergy.cpp 5 additions, 0 deletionssrc/basic/ColvarEnergy.cpp
- src/basic/GenericRead.cpp 179 additions, 0 deletionssrc/basic/GenericRead.cpp
- src/basic/PlumedMain.cpp 15 additions, 7 deletionssrc/basic/PlumedMain.cpp
- src/basic/PlumedMain.h 6 additions, 0 deletionssrc/basic/PlumedMain.h
- src/cltools/CLToolDriver.cpp 145 additions, 134 deletionssrc/cltools/CLToolDriver.cpp
- src/tools/PlumedFile.cpp 10 additions, 3 deletionssrc/tools/PlumedFile.cpp
- src/tools/PlumedFile.h 4 additions, 0 deletionssrc/tools/PlumedFile.h
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