Skip to content
Snippets Groups Projects
Commit 2d4eec8b authored by Carlo Camilloni's avatar Carlo Camilloni
Browse files

[makedoc]

tutorials: fixes
parent 6b6a2da2
No related branches found
No related tags found
No related merge requests found
...@@ -209,7 +209,7 @@ for example the set of Secondary Structure CVs (\ref ANTIBETARMSD, \ref PARABETA ...@@ -209,7 +209,7 @@ for example the set of Secondary Structure CVs (\ref ANTIBETARMSD, \ref PARABETA
MOLINFO STRUCTURE=template.pdb MOLINFO STRUCTURE=template.pdb
abeta: ANTIBETARMSD RESIDUES=all TYPE=DRMSD LESS_THAN={RATIONAL R_0=0.08 NN=8 MM=12} STRANDS_CUTOFF=1 abeta: ANTIBETARMSD RESIDUES=all TYPE=DRMSD LESS_THAN={RATIONAL R_0=0.08 NN=8 MM=12} STRANDS_CUTOFF=1
PRINT ARG=abeta.less_than STRIDE=1 FILE=COLVAR PRINT ARG=abeta.lessthan STRIDE=1 FILE=COLVAR
ENDPLUMED ENDPLUMED
\endverbatim \endverbatim
...@@ -257,10 +257,10 @@ DISTANCES ... ...@@ -257,10 +257,10 @@ DISTANCES ...
GROUP=ca MEAN MIN={BETA=50} MAX={BETA=0.02} MOMENTS=2 LABEL=dd GROUP=ca MEAN MIN={BETA=50} MAX={BETA=0.02} MOMENTS=2 LABEL=dd
... DISTANCES ... DISTANCES
PRINT ARG=abeta.less_than,dd.mean,dd.min,dd.max,dd.moment-2 STRIDE=1 FILE=COLVAR PRINT ARG=abeta.lessthan,dd.mean,dd.min,dd.max,dd.moment-2 STRIDE=1 FILE=COLVAR
HISTOGRAM ... HISTOGRAM ...
ARG=abeta.less_than,dd.mean ARG=abeta.lessthan,dd.mean
USE_ALL_DATA USE_ALL_DATA
KERNEL=discrete KERNEL=discrete
GRID_MIN=0,0.8 GRID_MIN=0,0.8
...@@ -286,7 +286,7 @@ and the BANDWIDTH should be smaller (i.e. one order of magnitude) than the varia ...@@ -286,7 +286,7 @@ and the BANDWIDTH should be smaller (i.e. one order of magnitude) than the varia
\verbatim \verbatim
HISTOGRAM ... HISTOGRAM ...
ARG=abeta.less_than,dd.mean ARG=abeta.lessthan,dd.mean
USE_ALL_DATA USE_ALL_DATA
GRID_MIN=0,0.8 GRID_MIN=0,0.8
GRID_MAX=4,1.2 GRID_MAX=4,1.2
......
...@@ -34,7 +34,7 @@ DISTANCES ... ...@@ -34,7 +34,7 @@ DISTANCES ...
BETWEEN={GAUSSIAN LOWER=1.0 UPPER=2.0} BETWEEN={GAUSSIAN LOWER=1.0 UPPER=2.0}
MIN={BETA=500.} MIN={BETA=500.}
... DISTANCES ... DISTANCES
PRINT ARG=d1.less_than,d1.more_than,d1.between,d1.min FILE=colvar STRIDE=10 PRINT ARG=d1.lessthan,d1.morethan,d1.between,d1.min FILE=colvar STRIDE=10
\endverbatim \endverbatim
(see \ref DISTANCES and \ref PRINT) (see \ref DISTANCES and \ref PRINT)
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment