Added call to runFinalJobs in plumed in simplemd

[makedoc]

(cherry picked from commit 781e5677)

src/cltools/SimpleMD.cpp

@@ -602,6 +602,9 @@ private:
 
     }
 
+// call final plumed jobs
+    plumed->cmd("runFinalJobs");
+
 // write final positions
     write_final_positions(outputfile,natoms,positions,cell,wrapatoms);