Commits · fa95fb13950efef32a1746dd610dfc2cd2193955 · Matej Lexa / nested

Dec 09, 2021
- Update requirements.txt · fa95fb13
  Pavel Jedlicka authored Dec 09, 2021
  
  fa95fb13
- Update setup.py · 3bdb396e
  Pavel Jedlicka authored Dec 09, 2021
  
  3bdb396e
Nov 19, 2021
- Add Docker instruction · a94528d0
  Son Hoang Nguyen authored Nov 19, 2021
  
  a94528d0
- Add test data · f5cd4c9d
  Son Hoang Nguyen authored Nov 19, 2021
  
  f5cd4c9d
Nov 11, 2021
- trf fix · 42b4e318
  jedlickap authored Nov 11, 2021
  
  42b4e318
- Merge branch 'feature/custom-discovery-tool' into 'master' · 3dafa070
  Pavel Jedlicka authored Nov 11, 2021
```
Feature/custom discovery tool

See merge request !23
```
  3dafa070
- cleanup after solo_ltr and trf; correct solo_ltr numbering · b69bdbc2
  Ivan Vanát authored Nov 11, 2021
  
  b69bdbc2
Feb 24, 2021
- Merge branch 'feature/custom-discovery-tool' of... · b3de6c8e
  Ivan Vanát authored Feb 24, 2021
```
Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
```
  b3de6c8e
- fixed trf filtering · 102d1d7c
  Pavel Jedlicka authored Feb 24, 2021
  
  102d1d7c
Feb 03, 2021
- Merge branch 'feature/custom-discovery-tool' of... · ba6e9b25
  Ivan Vanát authored Feb 03, 2021
```
Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
```
  ba6e9b25
- fixed trf; added output · 65e2f929
  Pavel Jedlicka authored Feb 03, 2021
  
  65e2f929
Jan 21, 2021
- Merge branch 'feature/custom-discovery-tool' of... · b9c572e4
  Ivan Vanát authored Jan 21, 2021
```
Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
```
  b9c572e4
- fixed conflict · ac6d073f
  Ivan Vanát authored Jan 21, 2021
  
  ac6d073f
Dec 16, 2020
- tadnem repeat finder integrated not tested properly yet · 86e4fdf4
  Pavel Jedlicka authored Dec 16, 2020
  
  86e4fdf4
Nov 25, 2020
- fixed chromo domain overlap with ltr · 6fc973ec
  Pavel Jedlicka authored Nov 25, 2020
  
  6fc973ec
Nov 05, 2020
- added check for ram usage and appropriate warning message · 41a0a417
  Pavel Jedlicka authored Nov 05, 2020
  
  41a0a417
Oct 01, 2020
- cant have nested repo · cb1fd5ff
  Pavel Jedlicka authored Oct 01, 2020
  
  cb1fd5ff
- updated gitignore · 3e42ece4
  Pavel Jedlicka authored Oct 01, 2020
  
  3e42ece4
- added ram tracker · 35c664d9
  Pavel Jedlicka authored Oct 01, 2020
  
  35c664d9
Sep 10, 2020
- LTRharvest implemented; can add more discovery tools · 64f80f3b
  Pavel Jedlicka authored Sep 10, 2020
  
  64f80f3b
Jun 08, 2020
- Update README.md Added virtual machine section · d693a0de
  Matej Lexa authored Jun 08, 2020
  
  d693a0de
May 26, 2020
- Update teGreedyNester_installation_v1.sh · d4dd9de5
  Pavel Jedlicka authored May 26, 2020
  
  d4dd9de5
- Update teGreedyNester_installation_v1.sh · 55cb46c8
  Pavel Jedlicka authored May 26, 2020
  
  55cb46c8
- Upload New File · 6f59a28d
  Pavel Jedlicka authored May 26, 2020
  
  6f59a28d
May 25, 2020
- Update teGreedyNester_installation.py · ec377525
  Pavel Jedlicka authored May 25, 2020
  
  ec377525
May 22, 2020
- Update teGreedyNester_installation.py · 83876235
  Pavel Jedlicka authored May 22, 2020
  
  83876235
- Update teGreedyNester_installation.py · 49500ca4
  Pavel Jedlicka authored May 22, 2020
  
  49500ca4
- Upload New File · ea74a7e0
  Pavel Jedlicka authored May 22, 2020
  
  ea74a7e0
- Update config_template.yml · 0eaed7ae
  Pavel Jedlicka authored May 22, 2020
  
  0eaed7ae
May 09, 2020
- fixed permission check for non-existing output folder · 30ca8d1f
  Ivan Vanát authored May 09, 2020
  
  30ca8d1f
May 07, 2020
- Merge branch 'master' of https://gitlab.fi.muni.cz/lexa/nested · 5a8784f3
  Ivan Vanát authored May 07, 2020
  
  5a8784f3
- deleted unused arguments; added output directory validation · 582e0068
  Ivan Vanát authored May 07, 2020
  
  582e0068
Feb 18, 2020
- Replace TEnesterInstallationProcedure.pdf · 87057a68
  Pavel Jedlicka authored Feb 18, 2020
  
  87057a68
Feb 14, 2020
- Update README.md added link to TEgnester virtual machine at... · e5f39437
  Matej Lexa authored Feb 14, 2020
```
Update README.md added link to TEgnester virtual machine at http://hedron.fi.muni.cz/TE-nester_Mint.zip
```
  e5f39437
- Update README.md · 879aa94c
  Matej Lexa authored Feb 14, 2020
  
  879aa94c
- Update README.md - added PYTONPATH note · 50f039a7
  Matej Lexa authored Feb 14, 2020
  
  50f039a7
- Update README.md · 1500bf24
  Matej Lexa authored Feb 14, 2020
  
  1500bf24
- Update README.md for user space installation of BLAST · a1af8d75
  Matej Lexa authored Feb 14, 2020
  
  a1af8d75
- Update README.md to better show the need for creating config.yml · e9f7e39c
  Matej Lexa authored Feb 14, 2020
  
  e9f7e39c
- Update README.md for user-space installation of GenomeTools · eaddeb9d
  Matej Lexa authored Feb 14, 2020
  
  eaddeb9d