Commits · 9bf68b138ba2db60cb2d8c52c8ded3028e8a1fc2 · Matej Lexa / nested

Mar 06, 2020
- Fixed function arguments and sequence generating issues · 9bf68b13
  Jakub Horváth authored Mar 06, 2020
  
  9bf68b13
Mar 05, 2020
- fixed division by zero edge case · 4c3b724d
  Jakub Horváth authored Mar 05, 2020
  
  4c3b724d
- . · 59e3e707
  Jakub Horváth authored Mar 05, 2020
  
  59e3e707
- Added guided parametrisation based on elements in input sequence · 9e2844b4
  Jakub Horváth authored Mar 05, 2020
  
  9e2844b4
- fixed minor issues · 7ccbb551
  Jakub Horváth authored Mar 05, 2020
  
  7ccbb551
- distributed some functionality into submodules, fixed parameter values range · 5df3b901
  Jakub Horváth authored Mar 05, 2020
  
  5df3b901
- changed parameter ranges slightly · 36fd45ba
  Jakub Horváth authored Mar 05, 2020
  
  36fd45ba
- fixed parameter ranges to sensible values, added comments · c1af725c
  Jakub Horváth authored Mar 05, 2020
  
  c1af725c
Mar 04, 2020
- fixing issues with KS testing · a0fa3a15
  Jakub Horváth authored Mar 04, 2020
  
  a0fa3a15
- . · f0033372
  Jakub Horváth authored Mar 04, 2020
  
  f0033372
- Fixed file path issues · 00897454
  Jakub Horváth authored Mar 04, 2020
  
  00897454
- Fixed output directory creation · e805291f
  Jakub Horváth authored Mar 04, 2020
  
  e805291f
- . · ae7f800e
  Jakub Horváth authored Mar 04, 2020
  
  ae7f800e
- fixed generator error · 7828a3db
  Jakub Horváth authored Mar 04, 2020
  
  7828a3db
- Finished up last fixes, running tests on small number of iterations · f518ed21
  Jakub Horváth authored Mar 04, 2020
  
  f518ed21
Mar 03, 2020
- Working on monte carlo method · ad65ab9b
  Jakub Horváth authored Mar 03, 2020
  
  ad65ab9b
Feb 26, 2020
- Fixed database creation, working on problems with bad result accuracy · d379a356
  Jakub Horváth authored Feb 26, 2020
  
  d379a356
Feb 24, 2020
- Working on ltr_finder integration · a96a00ea
  Jakub Horváth authored Feb 24, 2020
  
  a96a00ea
Feb 23, 2020
- Major changes to functionality and optimisation · 5733ae64
  Jakub Horváth authored Feb 23, 2020
  
  5733ae64
- removed unnecessary files created during initial phase · 09a2b678
  Jakub Horváth authored Feb 23, 2020
  
  09a2b678
Feb 22, 2020
- fixed @click arguments · 287579f3
  Jakub Horváth authored Feb 22, 2020
  
  287579f3
- fixing get_accuracy() · 723eaaf1
  Jakub Horváth authored Feb 22, 2020
  
  723eaaf1
- added todos · c4cc74a3
  Jakub Horváth authored Feb 22, 2020
  
  c4cc74a3
- fixed indentation error in gff_parser.py · 0d199065
  Jakub Horváth authored Feb 22, 2020
  
  0d199065
Feb 20, 2020
- cleared up junk code in gff_parser.py · 57e07706
  Jakub Horváth authored Feb 20, 2020
  
  57e07706
- Merge branch 'xhorvat9-branch' of gitlab.fi.muni.cz:lexa/nested into xhorvat9-branch · 9e7b6983
  Jakub Horváth authored Feb 20, 2020
  
  9e7b6983
- added comments · a73e5a77
  Jakub Horváth authored Feb 20, 2020
  
  a73e5a77
- Update gff_parser_changed.py · 386f776b
  Jakub Horváth authored Feb 20, 2020
  
  386f776b
- added todos · 01b9c58d
  Jakub Horváth authored Feb 20, 2020
  
  01b9c58d
- added post-analysis config.yml setup and nester final run · cbd72872
  Jakub Horváth authored Feb 20, 2020
  
  cbd72872
Feb 19, 2020
- fixed parameter -u setting in config.yml · 7e4305f6
  Jakub Horváth authored Feb 19, 2020
  
  7e4305f6
- Started work on evaluating the parametrisation results, fixing -u parameter bug · 5b5cce4f
  Jakub Horváth authored Feb 19, 2020
  
  5b5cce4f
Feb 18, 2020
- added new TODOs · c97a7878
  Jakub Horváth authored Feb 18, 2020
  
  c97a7878
- Update TODO.txt · 102b3c50
  Jakub Horváth authored Feb 18, 2020
  
  102b3c50
- TODOs file · dc5f4f4c
  Jakub Horváth authored Feb 18, 2020
  
  dc5f4f4c
- Fixed case where Regex wasnt matching negative numbers · 19e43d67
  Jakub Horváth authored Feb 18, 2020
  
  19e43d67
Feb 13, 2020
- working on case where no reference database is given · 8439123f
  Jakub Horváth authored Feb 13, 2020
  
  8439123f
Feb 06, 2020

Deleted TEster/TEster.egg-info/PKG-INFO, TEster/TEster.egg-info/SOURCES.txt,... · 4d464283

Jakub Horváth authored Feb 06, 2020

Deleted TEster/TEster.egg-info/PKG-INFO, TEster/TEster.egg-info/SOURCES.txt, TEster/TEster.egg-info/dependency_links.txt, TEster/TEster.egg-info/entry_points.txt, TEster/TEster.egg-info/requires.txt, TEster/TEster.egg-info/top_level.txt, TEster/build/lib/analysis/__init__.py, TEster/build/lib/testingTools/__init__.py, TEster/build/lib/testingTools/compare.py, TEster/build/lib/testingTools/detection_region_analyser.py, TEster/build/lib/testingTools/get_average_lengths.py, TEster/build/lib/testingTools/gff_parser.py, TEster/build/lib/testingTools/plot_bases.py, TEster/build/lib/testingTools/position_analysis.py, TEster/build/lib/toolchain/TEster.py, TEster/build/lib/toolchain/__init__.py, TEster/build/lib/toolchain/analyser.py, TEster/build/lib/toolchain/config_parameter.py, TEster/build/lib/toolchain/database_loader.py, TEster/build/lib/toolchain/gff_compare.py, TEster/build/lib/toolchain/input_load.py, TEster/build/lib/toolchain/nester_run.py, TEster/build/lib/toolchain/run_finder.py, TEster/build/lib/toolchain/sequence_generator.py, TEster/dist/TEster-1.0.0-py3.6.egg, TEster/testingTools/__init__.py, TEster/testingTools/compare.py, TEster/testingTools/detection_region_analyser.py, TEster/testingTools/get_average_lengths.py, TEster/testingTools/gff_parser.py, TEster/testingTools/plot_bases.py, TEster/testingTools/position_analysis.py files

4d464283

skipped fixing packaging issues, will focus on building the program and extending behavior · 1185db42
Jakub Horváth authored Feb 06, 2020

1185db42

Feb 05, 2020
- fixed minor function call issues · b39300ee
  Jakub Horváth authored Feb 05, 2020
  
  b39300ee