Commits · 1364683387d952c6bdb212771bd2da839be503ef · Matej Lexa / nested

Nov 08, 2018
- Merge branch 'master' of https://gitlab.fi.muni.cz/lexa/nested · 13646833
  Ivan Vanát authored Nov 08, 2018
  
  13646833
- Removed dbs and testing fasta files · 3d8bab8e
  Ivan Vanát authored Nov 08, 2018
  
  3d8bab8e
Oct 11, 2018
- Upload New File · 0a959277
  Ivan Vanát authored Oct 11, 2018
  
  0a959277
- Upload New File · ee1c6d5e
  Pavel Jedlicka authored Oct 11, 2018
  
  ee1c6d5e
- Upload New File · a6764946
  Pavel Jedlicka authored Oct 11, 2018
  
  a6764946
Oct 10, 2018
- Added prosite and gydb to repo · 7b09ed72
  Ivan Vanát authored Oct 10, 2018
  
  7b09ed72
- Add new directory · ac6f1730
  Ivan Vanát authored Oct 10, 2018
  
  ac6f1730
Oct 03, 2018
- Update config.yml · 9f0013a3
  Pavel Jedlicka authored Oct 03, 2018
  
  9f0013a3
- Update .gitignore · 2fd5bbd8
  Pavel Jedlicka authored Oct 03, 2018
  
  2fd5bbd8
- Latest version · ef0682cf
  Pavel Jedlička authored Oct 03, 2018
  
  ef0682cf
Aug 30, 2018
- Update ltr_split.py · a8303a87
  Pavel Jedlicka authored Aug 30, 2018
  
  a8303a87
Aug 25, 2018
- Added fig2 and fig3 · addc2a6e
  Matej Lexa authored Aug 25, 2018
  
  addc2a6e
- Added fig2 and fig3 · 8d309755
  Matej Lexa authored Aug 25, 2018
  
  8d309755
- Started working on Methods · 78e2b2d0
  Matej Lexa authored Aug 25, 2018
  
  78e2b2d0
Aug 24, 2018
- Added Algorithm section and Figure 1 · 62d22ab5
  Matej Lexa authored Aug 24, 2018
  
  62d22ab5
- Added INtroduction draft · aaccec26
  Matej Lexa authored Aug 24, 2018
  
  aaccec26
- Abstract, basic paper structure, fixed addresses · 4100f69c
  Matej Lexa authored Aug 24, 2018
  
  4100f69c
- LaTeX source file necessary for compilation added · 0001d51b
  Matej Lexa authored Aug 24, 2018
  
  0001d51b
- BIBM 2018 title and abstract draft · b576d6da
  Matej Lexa authored Aug 24, 2018
  
  b576d6da
- Merge branch 'master' of https://gitlab.fi.muni.cz/lexa/nested · 3257a6f8
  Matej Lexa authored Aug 24, 2018
  
  3257a6f8
- Initial commit of paper template for BIBM 2018 - will become either 8 page... · ad560098
  Matej Lexa authored Aug 24, 2018
```
Initial commit of paper template for BIBM 2018 - will become either 8 page full-paper or 3-page poster paper, deadline Sep 2.
```
  ad560098
Aug 14, 2018
- Replace ltr_split.py · 279b30ff
  Pavel Jedlicka authored Aug 14, 2018
  
  279b30ff
Aug 01, 2018
- Update config.yml · 94437b4b
  Pavel Jedlicka authored Aug 01, 2018
  
  94437b4b
- Replace gff.py · 70802651
  Pavel Jedlicka authored Aug 01, 2018
  
  70802651
- Upload New File · 26ca6d77
  Pavel Jedlicka authored Aug 01, 2018
  
  26ca6d77
- fixed drift issue by removing -1 and +1 in TE cropping in nester.py · c639206e
  Matej Lexa authored Aug 01, 2018
  
  c639206e
Jun 16, 2018
- Merge pull request #21 from rlapar/indices-fix · f26b88e0
  rlapar authored Jun 16, 2018
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indices fix
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  f26b88e0
- indices fix · fd032021
  rlapar authored Jun 16, 2018
  
  fd032021
- Merge pull request #20 from rlapar/include-tsd · 7bbc588c
  rlapar authored Jun 16, 2018
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Include tsd and fasta output
```
  7bbc588c
- full fasta output · 72414463
  rlapar authored Jun 16, 2018
  
  72414463
- fasta file offset · e5e59278
  rlapar authored Jun 16, 2018
  
  e5e59278
- tsr included without scoring · 50fe627e
  rlapar authored Jun 16, 2018
  
  50fe627e
Jun 14, 2018
- Merge pull request #19 from rlapar/bug-fix · 82e6d1ce
  rlapar authored Jun 14, 2018
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Bug fix
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  82e6d1ce
- formatting · f07f4f90
  rlapar authored Jun 14, 2018
  
  f07f4f90
- LTR location expand · 1ef1c7b2
  rlapar authored Jun 14, 2018
  
  1ef1c7b2
Jun 01, 2018
- Merge pull request #18 from rlapar/gff-fix · c99bf3c4
  rlapar authored Jun 01, 2018
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fasta naming fix
```
  c99bf3c4
- fasta naming fix · 8960ed6b
  rlapar authored Jun 01, 2018
  
  8960ed6b
May 24, 2018
- Merge pull request #17 from rlapar/cli-fix · 24a29a3a
  rlapar authored May 24, 2018
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Nester CLI fix
```
  24a29a3a
- Nester CLI fix · d474916f
  rlapar authored May 24, 2018
  
  d474916f
May 08, 2018
- Merge pull request #16 from rlapar/gff-format · 2190fa1f
  rlapar authored May 08, 2018
```
gff format: + pbs, ppt, ltr
```
  2190fa1f