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Commit f056357a authored by rlapar's avatar rlapar
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filepath escape

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main.py
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...@@ -43,6 +43,7 @@ def main(input_fasta, sketch_only, generate_from_fasta, baselength, number_of_it ...@@ -43,6 +43,7 @@ def main(input_fasta, sketch_only, generate_from_fasta, baselength, number_of_it
if input_fasta: if input_fasta:
sequences = list(SeqIO.parse(open(input_fasta), 'fasta')) sequences = list(SeqIO.parse(open(input_fasta), 'fasta'))
for sequence in sequences: for sequence in sequences:
sequence.id = sequence.id.replace('/', '--')
seq_start_time = datetime.now() seq_start_time = datetime.now()
print('Processing {}...'.format(sequence.id), end='\r') print('Processing {}...'.format(sequence.id), end='\r')
try: try:
...@@ -80,4 +81,4 @@ def main(input_fasta, sketch_only, generate_from_fasta, baselength, number_of_it ...@@ -80,4 +81,4 @@ def main(input_fasta, sketch_only, generate_from_fasta, baselength, number_of_it
print('Number of errors: {}'.format(number_of_errors)) print('Number of errors: {}'.format(number_of_errors))
if __name__ == '__main__': if __name__ == '__main__':
main() main()
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