Commit 7169ee36 authored by Matej Lexa's avatar Matej Lexa
Browse files

Update README.md to precise user-space installation procedure.

parent ef50d2d8

README.md

+9 −2
Original line number Diff line number Diff line
@@ -52,6 +52,13 @@ sudo apt-get install libgenometools0 libgenometools0-dev 
pip3 install bcbio-gff==0.6.4 click==6.7 decorator==4.2.1 networkx==2.1 numpy==1.14.2

PyYAML==3.12 six==1.11. --no-cache-dir

```

For user-space installation use:



```

pip3 install bcbio-gff==0.6.4 click==6.7 decorator==4.2.1 networkx==2.1 numpy==1.14.2

PyYAML==3.12 six==1.11. --no-cache-dir --user

```

Note: the version numbers are minimal recommended versions, on many systems you can leave those out.



### TE-greedy-nester
@@ -65,13 +72,13 @@ cd nested 
#### modify respective paths in 'config_template.yml' save as 'config.yml' and call:



```

sudo ./setup.sh

sudo bash ./setup.sh

```



#### For user-space installation of TE-greedy-nester call:



```

./setup.sh --user

bash ./setup.sh --user

```