- Sep 01, 2021
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Matej Lexa authored
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Matej Lexa authored
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Matej Lexa authored
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- Aug 31, 2021
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Matej Lexa authored
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Monika Čechová authored
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Matej Lexa authored
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Matej Lexa authored
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Monika Čechová authored
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- Aug 28, 2021
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Matej Lexa authored
Fixed a bug where some lines were not pushed to @oldlines1/2; also a typo in undef @oldlines2 that messed up the output
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Matej Lexa authored
A perl script to carry out local sorting and duplicate elimination after bedtool intersect and pair formation for tabulation
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- Aug 27, 2021
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Matej Lexa authored
Fixed a bug in extract_pairs.pl that assumed HiC read pairs only connect (bedtools intersect) two annotations and not more
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Matej Lexa authored
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- Aug 26, 2021
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Matej Lexa authored
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- Aug 25, 2021
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Matej Lexa authored
Replaced bwa mem with mapPacBio.sh from BBMap package, added PlantSat sequence analysis analogically to contigs from Repeat Explorer
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- Aug 22, 2021
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Monika Čechová authored
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Monika Čechová authored
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- Aug 15, 2021
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Son Hoang Nguyen authored
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Son Hoang Nguyen authored
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- Aug 12, 2021
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Monika Čechová authored
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Monika Čechová authored
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Monika Čechová authored
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- Jul 09, 2021
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Monika Čechová authored
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Monika Čechová authored
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Monika Čechová authored
processes now moved to modules, test paired data are read into the channel and passed into the pipeline
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Monika Čechová authored
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Monika Čechová authored
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Monika Čechová authored
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- Jun 29, 2021
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Monika Čechová authored
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Monika Čechová authored
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Monika Čechová authored
extended the script to include blast results, assignment to clusters, and the calculation of the matrix
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- Jun 25, 2021
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Monika Čechová authored
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Monika Čechová authored
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Monika Čechová authored
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Monika Čechová authored
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- Jun 18, 2021
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Matej Lexa authored
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- Apr 10, 2021
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Matej Lexa authored
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Matej Lexa authored
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