diff --git a/configure b/configure
index c566fb77b26729418d6682b6074c1fb5cdf545ff..58cab9b74fd06ace0fdcae75a55ee85c5ff33b64 100755
--- a/configure
+++ b/configure
@@ -2341,12 +2341,24 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
# use it to check if a flag is available on this compiler
+# PLUMED_SEARCH_LIBS(function,search-libs[,action-if-found][,action-if-not-found][,other-libraries])
+# same as AC_SEARCH_LIBS, but does not try any library unless $libsearch==true
+# Should be used instead of AC_SEARCH_LIBS in order to make --disable-libsearch work correctly
+
+
# PLUMED_CHECK_PACKAGE(header,function,define[,library])
# first we check if the header is present. if so, we check if the given function can be found.
# if it cannot be found and the fourth argument (library) has been supplied, we look for it
# in the library. finally, we set the define flag
+# PLUMED_CHECK_CXX_PACKAGE(name,program,define[,library])
+# Similar to PLUMED_CHECK_PACKAGE but suitable for checking C++ libraries.
+# Name is just a string used in the configure log
+# program is a string containing a short C++ program that should compiled.
+# If present and necessary, library is also linked.
+
+
##################################################################
{ $as_echo "$as_me:${as_lineno-$LINENO}: Optional modules are disabled by default" >&5
@@ -5596,10 +5608,8 @@ else
fi
-save_LIBS="$LIBS"
# Then check for blas. This is a bit complicated because we want to allow
# either the version with underscore or the one without
-# If they are not found in the normal search path, we repeat the search with -lblas
blas_found=
lapack_found=
@@ -5615,24 +5625,191 @@ fi
# first look for blas
if test "$external_blas" == true ; then
-ac_fn_cxx_check_func "$LINENO" "dgemv" "ac_cv_func_dgemv"
-if test "x$ac_cv_func_dgemv" = xyes; then :
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dgemv" >&5
+$as_echo_n "checking for library containing dgemv... " >&6; }
+if ${ac_cv_search_dgemv+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dgemv ();
+int
+main ()
+{
+return dgemv ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' blas; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dgemv=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_dgemv+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_dgemv+:} false; then :
+
+else
+ ac_cv_search_dgemv=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dgemv" >&5
+$as_echo "$ac_cv_search_dgemv" >&6; }
+ac_res=$ac_cv_search_dgemv
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
blas_found=nounderscore
else
-ac_fn_cxx_check_func "$LINENO" "dgemv_" "ac_cv_func_dgemv_"
-if test "x$ac_cv_func_dgemv_" = xyes; then :
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dgemv_" >&5
+$as_echo_n "checking for library containing dgemv_... " >&6; }
+if ${ac_cv_search_dgemv_+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dgemv_ ();
+int
+main ()
+{
+return dgemv_ ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' blas; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dgemv_=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_dgemv_+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_dgemv_+:} false; then :
+
+else
+ ac_cv_search_dgemv_=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dgemv_" >&5
+$as_echo "$ac_cv_search_dgemv_" >&6; }
+ac_res=$ac_cv_search_dgemv_
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
blas_found=underscore
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dgemv_" >&5
+$as_echo_n "checking for library containing dgemv_... " >&6; }
+if ${ac_cv_search_dgemv_+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dgemv_ ();
+int
+main ()
+{
+return dgemv_ ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dgemv_=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_dgemv_+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_dgemv_+:} false; then :
+
else
+ ac_cv_search_dgemv_=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dgemv_" >&5
+$as_echo "$ac_cv_search_dgemv_" >&6; }
+ac_res=$ac_cv_search_dgemv_
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ blas_found=underscore
+fi
+
+ fi
+
-if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dgemv in -lblas" >&5
-$as_echo_n "checking for dgemv in -lblas... " >&6; }
-if ${ac_cv_lib_blas_dgemv+:} false; then :
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dgemv" >&5
+$as_echo_n "checking for library containing dgemv... " >&6; }
+if ${ac_cv_search_dgemv+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lblas $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -5651,28 +5828,46 @@ return dgemv ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_blas_dgemv=yes
-else
- ac_cv_lib_blas_dgemv=no
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dgemv=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
+ conftest$ac_exeext
+ if ${ac_cv_search_dgemv+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_dgemv+:} false; then :
+
+else
+ ac_cv_search_dgemv=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_blas_dgemv" >&5
-$as_echo "$ac_cv_lib_blas_dgemv" >&6; }
-if test "x$ac_cv_lib_blas_dgemv" = xyes; then :
- LIBS="-lblas $LIBS" blas_found=nounderscore
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dgemv" >&5
+$as_echo "$ac_cv_search_dgemv" >&6; }
+ac_res=$ac_cv_search_dgemv
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ blas_found=nounderscore
else
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dgemv_ in -lblas" >&5
-$as_echo_n "checking for dgemv_ in -lblas... " >&6; }
-if ${ac_cv_lib_blas_dgemv_+:} false; then :
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dgemv_" >&5
+$as_echo_n "checking for library containing dgemv_... " >&6; }
+if ${ac_cv_search_dgemv_+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lblas $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -5691,38 +5886,108 @@ return dgemv_ ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_blas_dgemv_=yes
-else
- ac_cv_lib_blas_dgemv_=no
+for ac_lib in '' blas; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dgemv_=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
+ conftest$ac_exeext
+ if ${ac_cv_search_dgemv_+:} false; then :
+ break
fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_blas_dgemv_" >&5
-$as_echo "$ac_cv_lib_blas_dgemv_" >&6; }
-if test "x$ac_cv_lib_blas_dgemv_" = xyes; then :
- LIBS="-lblas $LIBS" blas_found=underscore
+done
+if ${ac_cv_search_dgemv_+:} false; then :
+else
+ ac_cv_search_dgemv_=no
fi
-
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dgemv_" >&5
+$as_echo "$ac_cv_search_dgemv_" >&6; }
+ac_res=$ac_cv_search_dgemv_
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ blas_found=underscore
fi
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dgemv_" >&5
+$as_echo_n "checking for library containing dgemv_... " >&6; }
+if ${ac_cv_search_dgemv_+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dgemv_ ();
+int
+main ()
+{
+return dgemv_ ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dgemv_=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_dgemv_+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_dgemv_+:} false; then :
+else
+ ac_cv_search_dgemv_=no
fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dgemv_" >&5
+$as_echo "$ac_cv_search_dgemv_" >&6; }
+ac_res=$ac_cv_search_dgemv_
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ blas_found=underscore
+fi
+
+ fi
+
fi
+ fi
+
fi
# if not found, then use internal lapack and blas
if test -z "$blas_found" ; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using internal lapack and blas, could be inefficient" >&5
$as_echo "$as_me: WARNING: using internal lapack and blas, could be inefficient" >&2;}
-LIBS="$save_LIBS"
-
fi
# if found, also look for external lapack
@@ -5731,29 +5996,21 @@ if test -n "$blas_found" ; then
$as_echo "#define __PLUMED_HAS_EXTERNAL_BLAS 1" >>confdefs.h
-save_LIBS="$LIBS"
-
if test "$external_lapack" == true ; then
# Then we look for lapack using same underscoring
case "$blas_found" in
(underscore) search_for=dsyevr_ ;;
(nounderscore) search_for=dsyevr ;;
esac
-as_ac_var=`$as_echo "ac_cv_func_$search_for" | $as_tr_sh`
-ac_fn_cxx_check_func "$LINENO" "$search_for" "$as_ac_var"
-if eval test \"x\$"$as_ac_var"\" = x"yes"; then :
- lapack_found=$blas_found
-else
-if test "${libsearch}" == true ; then
- as_ac_Lib=`$as_echo "ac_cv_lib_lapack_$search_for" | $as_tr_sh`
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $search_for in -llapack" >&5
-$as_echo_n "checking for $search_for in -llapack... " >&6; }
-if eval \${$as_ac_Lib+:} false; then :
+ if test "${libsearch}" == true ; then
+ as_ac_Search=`$as_echo "ac_cv_search_$search_for" | $as_tr_sh`
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing $search_for" >&5
+$as_echo_n "checking for library containing $search_for... " >&6; }
+if eval \${$as_ac_Search+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-llapack $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -5772,34 +6029,106 @@ return $search_for ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- eval "$as_ac_Lib=yes"
-else
- eval "$as_ac_Lib=no"
+for ac_lib in '' lapack; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ eval "$as_ac_Search=\$ac_res"
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
+ conftest$ac_exeext
+ if eval \${$as_ac_Search+:} false; then :
+ break
+fi
+done
+if eval \${$as_ac_Search+:} false; then :
+
+else
+ eval "$as_ac_Search=no"
fi
-eval ac_res=\$$as_ac_Lib
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+eval ac_res=\$$as_ac_Search
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
$as_echo "$ac_res" >&6; }
-if eval test \"x\$"$as_ac_Lib"\" = x"yes"; then :
- LIBS="-llapack $LIBS" lapack_found=yes
+eval ac_res=\$$as_ac_Search
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ lapack_found=yes
fi
+ else
+ as_ac_Search=`$as_echo "ac_cv_search_$search_for" | $as_tr_sh`
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing $search_for" >&5
+$as_echo_n "checking for library containing $search_for... " >&6; }
+if eval \${$as_ac_Search+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char $search_for ();
+int
+main ()
+{
+return $search_for ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ eval "$as_ac_Search=\$ac_res"
fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if eval \${$as_ac_Search+:} false; then :
+ break
+fi
+done
+if eval \${$as_ac_Search+:} false; then :
+else
+ eval "$as_ac_Search=no"
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+eval ac_res=\$$as_ac_Search
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+eval ac_res=\$$as_ac_Search
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ lapack_found=yes
fi
+ fi
+
fi
# if not found, then use internal lapack with external blas
if test -z "$lapack_found" ; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using internal lapack, could be inefficient" >&5
$as_echo "$as_me: WARNING: using internal lapack, could be inefficient" >&2;}
-LIBS="$save_LIBS"
-
else
$as_echo "#define __PLUMED_HAS_EXTERNAL_LAPACK 1" >>confdefs.h
@@ -5960,24 +6289,21 @@ if test $molfile_plugins == true ; then
$as_echo "#define __PLUMED_HAS_MOLFILE_PLUGINS 1" >>confdefs.h
-found=ko
-if test "$external_molfile_plugins" == true ; then
- ac_fn_cxx_check_header_mongrel "$LINENO" "libmolfile_plugin.h" "ac_cv_header_libmolfile_plugin_h" "$ac_includes_default"
+ if test "$external_molfile_plugins" == true ; then
+
+ found=ko
+ __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS=no
+ ac_fn_cxx_check_header_mongrel "$LINENO" "libmolfile_plugin.h" "ac_cv_header_libmolfile_plugin_h" "$ac_includes_default"
if test "x$ac_cv_header_libmolfile_plugin_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "molfile_dcdplugin_init" "ac_cv_func_molfile_dcdplugin_init"
-if test "x$ac_cv_func_molfile_dcdplugin_init" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for molfile_dcdplugin_init in -lmolfile_plugin" >&5
-$as_echo_n "checking for molfile_dcdplugin_init in -lmolfile_plugin... " >&6; }
-if ${ac_cv_lib_molfile_plugin_molfile_dcdplugin_init+:} false; then :
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing molfile_dcdplugin_init" >&5
+$as_echo_n "checking for library containing molfile_dcdplugin_init... " >&6; }
+if ${ac_cv_search_molfile_dcdplugin_init+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmolfile_plugin $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -5996,41 +6322,119 @@ return molfile_dcdplugin_init ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_molfile_plugin_molfile_dcdplugin_init=yes
-else
- ac_cv_lib_molfile_plugin_molfile_dcdplugin_init=no
+for ac_lib in '' molfile_plugin; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_molfile_dcdplugin_init=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_molfile_plugin_molfile_dcdplugin_init" >&5
-$as_echo "$ac_cv_lib_molfile_plugin_molfile_dcdplugin_init" >&6; }
-if test "x$ac_cv_lib_molfile_plugin_molfile_dcdplugin_init" = xyes; then :
- LIBS="-lmolfile_plugin $LIBS" found=ok
-fi
-
- fi
-
+ conftest$ac_exeext
+ if ${ac_cv_search_molfile_dcdplugin_init+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_molfile_dcdplugin_init+:} false; then :
-
+else
+ ac_cv_search_molfile_dcdplugin_init=no
fi
-
-
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-if test $found == ko ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using internal molfile_plugins, which only support dcd/xtc/trr/trj/crd files" >&5
-$as_echo "$as_me: WARNING: using internal molfile_plugins, which only support dcd/xtc/trr/trj/crd files" >&2;}
-else
- $as_echo "#define __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS 1" >>confdefs.h
-
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_molfile_dcdplugin_init" >&5
+$as_echo "$ac_cv_search_molfile_dcdplugin_init" >&6; }
+ac_res=$ac_cv_search_molfile_dcdplugin_init
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing molfile_dcdplugin_init" >&5
+$as_echo_n "checking for library containing molfile_dcdplugin_init... " >&6; }
+if ${ac_cv_search_molfile_dcdplugin_init+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char molfile_dcdplugin_init ();
+int
+main ()
+{
+return molfile_dcdplugin_init ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_molfile_dcdplugin_init=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_molfile_dcdplugin_init+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_molfile_dcdplugin_init+:} false; then :
+
+else
+ ac_cv_search_molfile_dcdplugin_init=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_molfile_dcdplugin_init" >&5
+$as_echo "$ac_cv_search_molfile_dcdplugin_init" >&6; }
+ac_res=$ac_cv_search_molfile_dcdplugin_init
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
+
+
fi
-fi
+ if test $found == ok ; then
+ $as_echo "#define __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS 1" >>confdefs.h
+
+ __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS=yes
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS" >&2;}
+ fi
+ if test "$__PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS" != yes ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using internal molfile_plugins, which only support dcd/xtc/trr/trj/crd files" >&5
+$as_echo "$as_me: WARNING: using internal molfile_plugins, which only support dcd/xtc/trr/trj/crd files" >&2;}
+ else
+ $as_echo "#define __PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS 1" >>confdefs.h
+
+ fi
+ fi
+fi
# this is special and is also attached to STATIC_LIBS
# this flag should be used also when linking MD engines to allow plumed
@@ -6081,21 +6485,135 @@ mpi_found=ko
if test $mpi == true ; then
found=ko
+ __PLUMED_HAS_MPI=no
ac_fn_cxx_check_header_mongrel "$LINENO" "mpi.h" "ac_cv_header_mpi_h" "$ac_includes_default"
if test "x$ac_cv_header_mpi_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "MPI_Init" "ac_cv_func_MPI_Init"
-if test "x$ac_cv_func_MPI_Init" = xyes; then :
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing MPI_Init" >&5
+$as_echo_n "checking for library containing MPI_Init... " >&6; }
+if ${ac_cv_search_MPI_Init+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char MPI_Init ();
+int
+main ()
+{
+return MPI_Init ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_MPI_Init=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_MPI_Init+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_MPI_Init+:} false; then :
+
+else
+ ac_cv_search_MPI_Init=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_MPI_Init" >&5
+$as_echo "$ac_cv_search_MPI_Init" >&6; }
+ac_res=$ac_cv_search_MPI_Init
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing MPI_Init" >&5
+$as_echo_n "checking for library containing MPI_Init... " >&6; }
+if ${ac_cv_search_MPI_Init+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char MPI_Init ();
+int
+main ()
+{
+return MPI_Init ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_MPI_Init=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_MPI_Init+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_MPI_Init+:} false; then :
+
+else
+ ac_cv_search_MPI_Init=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_MPI_Init" >&5
+$as_echo "$ac_cv_search_MPI_Init" >&6; }
+ac_res=$ac_cv_search_MPI_Init
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
found=ok
fi
+ fi
+
fi
if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_MPI 1" >>confdefs.h
+ $as_echo "#define __PLUMED_HAS_MPI 1" >>confdefs.h
+ __PLUMED_HAS_MPI=yes
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_MPI" >&5
$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_MPI" >&2;}
@@ -6180,22 +6698,18 @@ $as_echo "$ac_cv_prog_cxx_openmp" >&6; }
if test $matheval == true ; then
found=ko
+ __PLUMED_HAS_MATHEVAL=no
ac_fn_cxx_check_header_mongrel "$LINENO" "matheval.h" "ac_cv_header_matheval_h" "$ac_includes_default"
if test "x$ac_cv_header_matheval_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "evaluator_create" "ac_cv_func_evaluator_create"
-if test "x$ac_cv_func_evaluator_create" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for evaluator_create in -lmatheval" >&5
-$as_echo_n "checking for evaluator_create in -lmatheval... " >&6; }
-if ${ac_cv_lib_matheval_evaluator_create+:} false; then :
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing evaluator_create" >&5
+$as_echo_n "checking for library containing evaluator_create... " >&6; }
+if ${ac_cv_search_evaluator_create+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmatheval $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6214,154 +6728,126 @@ return evaluator_create ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_matheval_evaluator_create=yes
-else
- ac_cv_lib_matheval_evaluator_create=no
+for ac_lib in '' matheval; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_evaluator_create=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_matheval_evaluator_create" >&5
-$as_echo "$ac_cv_lib_matheval_evaluator_create" >&6; }
-if test "x$ac_cv_lib_matheval_evaluator_create" = xyes; then :
- LIBS="-lmatheval $LIBS" && found=ok
-fi
-
- fi
-
-
+ conftest$ac_exeext
+ if ${ac_cv_search_evaluator_create+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_evaluator_create+:} false; then :
-
+else
+ ac_cv_search_evaluator_create=no
fi
-
-
- if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_MATHEVAL 1" >>confdefs.h
-
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_MATHEVAL" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_MATHEVAL" >&2;}
- fi
-
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-if test $readdir_r == true ; then
-
- found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "dirent.h" "ac_cv_header_dirent_h" "$ac_includes_default"
-if test "x$ac_cv_header_dirent_h" = xyes; then :
-
- ac_fn_cxx_check_func "$LINENO" "readdir_r" "ac_cv_func_readdir_r"
-if test "x$ac_cv_func_readdir_r" = xyes; then :
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_evaluator_create" >&5
+$as_echo "$ac_cv_search_evaluator_create" >&6; }
+ac_res=$ac_cv_search_evaluator_create
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
found=ok
fi
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing evaluator_create" >&5
+$as_echo_n "checking for library containing evaluator_create... " >&6; }
+if ${ac_cv_search_evaluator_create+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char evaluator_create ();
+int
+main ()
+{
+return evaluator_create ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_evaluator_create=$ac_res
fi
-
-
- if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_READDIR_R 1" >>confdefs.h
-
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_READDIR_R" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_READDIR_R" >&2;}
- fi
-
-fi
-if test $cregex == true ; then
-
- found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "regex.h" "ac_cv_header_regex_h" "$ac_includes_default"
-if test "x$ac_cv_header_regex_h" = xyes; then :
-
- ac_fn_cxx_check_func "$LINENO" "regcomp" "ac_cv_func_regcomp"
-if test "x$ac_cv_func_regcomp" = xyes; then :
- found=ok
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_evaluator_create+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_evaluator_create+:} false; then :
-
+else
+ ac_cv_search_evaluator_create=no
fi
-
-
- if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_CREGEX 1" >>confdefs.h
-
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_CREGEX" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_CREGEX" >&2;}
- fi
-
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-if test $dlopen == true ; then
-
- found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "dlfcn.h" "ac_cv_header_dlfcn_h" "$ac_includes_default"
-if test "x$ac_cv_header_dlfcn_h" = xyes; then :
-
- ac_fn_cxx_check_func "$LINENO" "dlopen" "ac_cv_func_dlopen"
-if test "x$ac_cv_func_dlopen" = xyes; then :
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_evaluator_create" >&5
+$as_echo "$ac_cv_search_evaluator_create" >&6; }
+ac_res=$ac_cv_search_evaluator_create
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
found=ok
fi
-
-fi
-
-
- if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_DLOPEN 1" >>confdefs.h
-
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_DLOPEN" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_DLOPEN" >&2;}
- fi
-
-fi
-if test $execinfo == true ; then
-
- found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "execinfo.h" "ac_cv_header_execinfo_h" "$ac_includes_default"
-if test "x$ac_cv_header_execinfo_h" = xyes; then :
-
- ac_fn_cxx_check_func "$LINENO" "backtrace" "ac_cv_func_backtrace"
-if test "x$ac_cv_func_backtrace" = xyes; then :
- found=ok
-fi
+ fi
fi
if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_EXECINFO 1" >>confdefs.h
+ $as_echo "#define __PLUMED_HAS_MATHEVAL 1" >>confdefs.h
+ __PLUMED_HAS_MATHEVAL=yes
else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_EXECINFO" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_EXECINFO" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_MATHEVAL" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_MATHEVAL" >&2;}
fi
fi
-if test $zlib == true ; then
+if test $readdir_r == true ; then
found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "zlib.h" "ac_cv_header_zlib_h" "$ac_includes_default"
-if test "x$ac_cv_header_zlib_h" = xyes; then :
+ __PLUMED_HAS_READDIR_R=no
+ ac_fn_cxx_check_header_mongrel "$LINENO" "dirent.h" "ac_cv_header_dirent_h" "$ac_includes_default"
+if test "x$ac_cv_header_dirent_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "gzopen" "ac_cv_func_gzopen"
-if test "x$ac_cv_func_gzopen" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for gzopen in -lz" >&5
-$as_echo_n "checking for gzopen in -lz... " >&6; }
-if ${ac_cv_lib_z_gzopen+:} false; then :
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing readdir_r" >&5
+$as_echo_n "checking for library containing readdir_r... " >&6; }
+if ${ac_cv_search_readdir_r+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lz $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6371,42 +6857,666 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
#ifdef __cplusplus
extern "C"
#endif
-char gzopen ();
+char readdir_r ();
int
main ()
{
-return gzopen ();
+return readdir_r ();
;
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_z_gzopen=yes
-else
- ac_cv_lib_z_gzopen=no
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_readdir_r=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_z_gzopen" >&5
-$as_echo "$ac_cv_lib_z_gzopen" >&6; }
-if test "x$ac_cv_lib_z_gzopen" = xyes; then :
- LIBS="-lz $LIBS" && found=ok
+ conftest$ac_exeext
+ if ${ac_cv_search_readdir_r+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_readdir_r+:} false; then :
- fi
-
+else
+ ac_cv_search_readdir_r=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_readdir_r" >&5
+$as_echo "$ac_cv_search_readdir_r" >&6; }
+ac_res=$ac_cv_search_readdir_r
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing readdir_r" >&5
+$as_echo_n "checking for library containing readdir_r... " >&6; }
+if ${ac_cv_search_readdir_r+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char readdir_r ();
+int
+main ()
+{
+return readdir_r ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_readdir_r=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_readdir_r+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_readdir_r+:} false; then :
+
+else
+ ac_cv_search_readdir_r=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_readdir_r" >&5
+$as_echo "$ac_cv_search_readdir_r" >&6; }
+ac_res=$ac_cv_search_readdir_r
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
+
+
+fi
+
+
+ if test $found == ok ; then
+ $as_echo "#define __PLUMED_HAS_READDIR_R 1" >>confdefs.h
+
+ __PLUMED_HAS_READDIR_R=yes
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_READDIR_R" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_READDIR_R" >&2;}
+ fi
+
+fi
+if test $cregex == true ; then
+
+ found=ko
+ __PLUMED_HAS_CREGEX=no
+ ac_fn_cxx_check_header_mongrel "$LINENO" "regex.h" "ac_cv_header_regex_h" "$ac_includes_default"
+if test "x$ac_cv_header_regex_h" = xyes; then :
+
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing regcomp" >&5
+$as_echo_n "checking for library containing regcomp... " >&6; }
+if ${ac_cv_search_regcomp+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char regcomp ();
+int
+main ()
+{
+return regcomp ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_regcomp=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_regcomp+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_regcomp+:} false; then :
+
+else
+ ac_cv_search_regcomp=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_regcomp" >&5
+$as_echo "$ac_cv_search_regcomp" >&6; }
+ac_res=$ac_cv_search_regcomp
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing regcomp" >&5
+$as_echo_n "checking for library containing regcomp... " >&6; }
+if ${ac_cv_search_regcomp+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char regcomp ();
+int
+main ()
+{
+return regcomp ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_regcomp=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_regcomp+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_regcomp+:} false; then :
+else
+ ac_cv_search_regcomp=no
fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_regcomp" >&5
+$as_echo "$ac_cv_search_regcomp" >&6; }
+ac_res=$ac_cv_search_regcomp
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
fi
if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_ZLIB 1" >>confdefs.h
+ $as_echo "#define __PLUMED_HAS_CREGEX 1" >>confdefs.h
+ __PLUMED_HAS_CREGEX=yes
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_CREGEX" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_CREGEX" >&2;}
+ fi
+
+fi
+if test $dlopen == true ; then
+
+ found=ko
+ __PLUMED_HAS_DLOPEN=no
+ ac_fn_cxx_check_header_mongrel "$LINENO" "dlfcn.h" "ac_cv_header_dlfcn_h" "$ac_includes_default"
+if test "x$ac_cv_header_dlfcn_h" = xyes; then :
+
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dlopen" >&5
+$as_echo_n "checking for library containing dlopen... " >&6; }
+if ${ac_cv_search_dlopen+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dlopen ();
+int
+main ()
+{
+return dlopen ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dlopen=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_dlopen+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_dlopen+:} false; then :
+
+else
+ ac_cv_search_dlopen=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dlopen" >&5
+$as_echo "$ac_cv_search_dlopen" >&6; }
+ac_res=$ac_cv_search_dlopen
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dlopen" >&5
+$as_echo_n "checking for library containing dlopen... " >&6; }
+if ${ac_cv_search_dlopen+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dlopen ();
+int
+main ()
+{
+return dlopen ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_dlopen=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_dlopen+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_dlopen+:} false; then :
+
+else
+ ac_cv_search_dlopen=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_dlopen" >&5
+$as_echo "$ac_cv_search_dlopen" >&6; }
+ac_res=$ac_cv_search_dlopen
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
+
+
+fi
+
+
+ if test $found == ok ; then
+ $as_echo "#define __PLUMED_HAS_DLOPEN 1" >>confdefs.h
+
+ __PLUMED_HAS_DLOPEN=yes
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_DLOPEN" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_DLOPEN" >&2;}
+ fi
+
+fi
+if test $execinfo == true ; then
+
+ found=ko
+ __PLUMED_HAS_EXECINFO=no
+ ac_fn_cxx_check_header_mongrel "$LINENO" "execinfo.h" "ac_cv_header_execinfo_h" "$ac_includes_default"
+if test "x$ac_cv_header_execinfo_h" = xyes; then :
+
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing backtrace" >&5
+$as_echo_n "checking for library containing backtrace... " >&6; }
+if ${ac_cv_search_backtrace+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char backtrace ();
+int
+main ()
+{
+return backtrace ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_backtrace=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_backtrace+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_backtrace+:} false; then :
+
+else
+ ac_cv_search_backtrace=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_backtrace" >&5
+$as_echo "$ac_cv_search_backtrace" >&6; }
+ac_res=$ac_cv_search_backtrace
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing backtrace" >&5
+$as_echo_n "checking for library containing backtrace... " >&6; }
+if ${ac_cv_search_backtrace+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char backtrace ();
+int
+main ()
+{
+return backtrace ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_backtrace=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_backtrace+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_backtrace+:} false; then :
+
+else
+ ac_cv_search_backtrace=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_backtrace" >&5
+$as_echo "$ac_cv_search_backtrace" >&6; }
+ac_res=$ac_cv_search_backtrace
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
+
+
+fi
+
+
+ if test $found == ok ; then
+ $as_echo "#define __PLUMED_HAS_EXECINFO 1" >>confdefs.h
+
+ __PLUMED_HAS_EXECINFO=yes
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_EXECINFO" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_EXECINFO" >&2;}
+ fi
+
+fi
+if test $zlib == true ; then
+
+ found=ko
+ __PLUMED_HAS_ZLIB=no
+ ac_fn_cxx_check_header_mongrel "$LINENO" "zlib.h" "ac_cv_header_zlib_h" "$ac_includes_default"
+if test "x$ac_cv_header_zlib_h" = xyes; then :
+
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing gzopen" >&5
+$as_echo_n "checking for library containing gzopen... " >&6; }
+if ${ac_cv_search_gzopen+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char gzopen ();
+int
+main ()
+{
+return gzopen ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' z; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_gzopen=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_gzopen+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_gzopen+:} false; then :
+
+else
+ ac_cv_search_gzopen=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_gzopen" >&5
+$as_echo "$ac_cv_search_gzopen" >&6; }
+ac_res=$ac_cv_search_gzopen
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing gzopen" >&5
+$as_echo_n "checking for library containing gzopen... " >&6; }
+if ${ac_cv_search_gzopen+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char gzopen ();
+int
+main ()
+{
+return gzopen ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_gzopen=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_gzopen+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_gzopen+:} false; then :
+
+else
+ ac_cv_search_gzopen=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_gzopen" >&5
+$as_echo "$ac_cv_search_gzopen" >&6; }
+ac_res=$ac_cv_search_gzopen
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
+
+
+fi
+
+
+ if test $found == ok ; then
+ $as_echo "#define __PLUMED_HAS_ZLIB 1" >>confdefs.h
+
+ __PLUMED_HAS_ZLIB=yes
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_ZLIB" >&5
$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_ZLIB" >&2;}
@@ -6414,23 +7524,198 @@ $as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_ZLIB" >&2;}
fi
-save_LIBS="$LIBS"
+if test $gsl == true ; then
+ found=ko
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing cblas_dgemv" >&5
+$as_echo_n "checking for library containing cblas_dgemv... " >&6; }
+if ${ac_cv_search_cblas_dgemv+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char cblas_dgemv ();
+int
+main ()
+{
+return cblas_dgemv ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' gslcblas; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_cblas_dgemv=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_cblas_dgemv+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_cblas_dgemv+:} false; then :
+
+else
+ ac_cv_search_cblas_dgemv=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_cblas_dgemv" >&5
+$as_echo "$ac_cv_search_cblas_dgemv" >&6; }
+ac_res=$ac_cv_search_cblas_dgemv
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+
+ ac_fn_cxx_check_header_mongrel "$LINENO" "gsl/gsl_vector.h" "ac_cv_header_gsl_gsl_vector_h" "$ac_includes_default"
+if test "x$ac_cv_header_gsl_gsl_vector_h" = xyes; then :
+
+
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing gsl_vector_alloc" >&5
+$as_echo_n "checking for library containing gsl_vector_alloc... " >&6; }
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char gsl_vector_alloc ();
+int
+main ()
+{
+return gsl_vector_alloc ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' gsl; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_gsl_vector_alloc=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+
+else
+ ac_cv_search_gsl_vector_alloc=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_gsl_vector_alloc" >&5
+$as_echo "$ac_cv_search_gsl_vector_alloc" >&6; }
+ac_res=$ac_cv_search_gsl_vector_alloc
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing gsl_vector_alloc" >&5
+$as_echo_n "checking for library containing gsl_vector_alloc... " >&6; }
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char gsl_vector_alloc ();
+int
+main ()
+{
+return gsl_vector_alloc ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_gsl_vector_alloc=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+
+else
+ ac_cv_search_gsl_vector_alloc=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_gsl_vector_alloc" >&5
+$as_echo "$ac_cv_search_gsl_vector_alloc" >&6; }
+ac_res=$ac_cv_search_gsl_vector_alloc
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
+
+
+fi
+
-if test $gsl == true ; then
- found=ko
- ac_fn_cxx_check_func "$LINENO" "cblas_dgemv" "ac_cv_func_cblas_dgemv"
-if test "x$ac_cv_func_cblas_dgemv" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cblas_dgemv in -lgslcblas" >&5
-$as_echo_n "checking for cblas_dgemv in -lgslcblas... " >&6; }
-if ${ac_cv_lib_gslcblas_cblas_dgemv+:} false; then :
+fi
+
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing cblas_dgemv" >&5
+$as_echo_n "checking for library containing cblas_dgemv... " >&6; }
+if ${ac_cv_search_cblas_dgemv+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lgslcblas $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6449,43 +7734,47 @@ return cblas_dgemv ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_gslcblas_cblas_dgemv=yes
-else
- ac_cv_lib_gslcblas_cblas_dgemv=no
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_cblas_dgemv=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_gslcblas_cblas_dgemv" >&5
-$as_echo "$ac_cv_lib_gslcblas_cblas_dgemv" >&6; }
-if test "x$ac_cv_lib_gslcblas_cblas_dgemv" = xyes; then :
- LIBS="-lgslcblas $LIBS" found=ok
+ conftest$ac_exeext
+ if ${ac_cv_search_cblas_dgemv+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_cblas_dgemv+:} false; then :
- fi
-
+else
+ ac_cv_search_cblas_dgemv=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_cblas_dgemv" >&5
+$as_echo "$ac_cv_search_cblas_dgemv" >&6; }
+ac_res=$ac_cv_search_cblas_dgemv
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
- if test $found == ok ; then
- found=ko
ac_fn_cxx_check_header_mongrel "$LINENO" "gsl/gsl_vector.h" "ac_cv_header_gsl_gsl_vector_h" "$ac_includes_default"
if test "x$ac_cv_header_gsl_gsl_vector_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "gsl_vector_alloc" "ac_cv_func_gsl_vector_alloc"
-if test "x$ac_cv_func_gsl_vector_alloc" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for gsl_vector_alloc in -lgsl" >&5
-$as_echo_n "checking for gsl_vector_alloc in -lgsl... " >&6; }
-if ${ac_cv_lib_gsl_gsl_vector_alloc+:} false; then :
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing gsl_vector_alloc" >&5
+$as_echo_n "checking for library containing gsl_vector_alloc... " >&6; }
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lgsl $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6504,36 +7793,111 @@ return gsl_vector_alloc ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_gsl_gsl_vector_alloc=yes
-else
- ac_cv_lib_gsl_gsl_vector_alloc=no
+for ac_lib in '' gsl; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_gsl_vector_alloc=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
+ conftest$ac_exeext
+ if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+
+else
+ ac_cv_search_gsl_vector_alloc=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_gsl_gsl_vector_alloc" >&5
-$as_echo "$ac_cv_lib_gsl_gsl_vector_alloc" >&6; }
-if test "x$ac_cv_lib_gsl_gsl_vector_alloc" = xyes; then :
- LIBS="-lgsl $LIBS" found=ok
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_gsl_vector_alloc" >&5
+$as_echo "$ac_cv_search_gsl_vector_alloc" >&6; }
+ac_res=$ac_cv_search_gsl_vector_alloc
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
fi
- fi
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing gsl_vector_alloc" >&5
+$as_echo_n "checking for library containing gsl_vector_alloc... " >&6; }
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char gsl_vector_alloc ();
+int
+main ()
+{
+return gsl_vector_alloc ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_gsl_vector_alloc=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_gsl_vector_alloc+:} false; then :
+else
+ ac_cv_search_gsl_vector_alloc=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_gsl_vector_alloc" >&5
+$as_echo "$ac_cv_search_gsl_vector_alloc" >&6; }
+ac_res=$ac_cv_search_gsl_vector_alloc
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
fi
+
+fi
+
fi
+
if test $found == ok ; then
$as_echo "#define __PLUMED_HAS_GSL 1" >>confdefs.h
else
- LIBS="$save_LIBS"
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_GSL" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_GSL" >&5
$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_GSL" >&2;}
fi
fi
@@ -6541,22 +7905,18 @@ fi
if test $xdrfile == true ; then
found=ko
+ __PLUMED_HAS_XDRFILE=no
ac_fn_cxx_check_header_mongrel "$LINENO" "xdrfile/xdrfile_xtc.h" "ac_cv_header_xdrfile_xdrfile_xtc_h" "$ac_includes_default"
if test "x$ac_cv_header_xdrfile_xdrfile_xtc_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "write_xtc" "ac_cv_func_write_xtc"
-if test "x$ac_cv_func_write_xtc" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for write_xtc in -lxdrfile" >&5
-$as_echo_n "checking for write_xtc in -lxdrfile... " >&6; }
-if ${ac_cv_lib_xdrfile_write_xtc+:} false; then :
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing write_xtc" >&5
+$as_echo_n "checking for library containing write_xtc... " >&6; }
+if ${ac_cv_search_write_xtc+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lxdrfile $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6575,58 +7935,45 @@ return write_xtc ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_xdrfile_write_xtc=yes
-else
- ac_cv_lib_xdrfile_write_xtc=no
+for ac_lib in '' xdrfile; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_write_xtc=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_xdrfile_write_xtc" >&5
-$as_echo "$ac_cv_lib_xdrfile_write_xtc" >&6; }
-if test "x$ac_cv_lib_xdrfile_write_xtc" = xyes; then :
- LIBS="-lxdrfile $LIBS" && found=ok
-fi
-
- fi
-
-
+ conftest$ac_exeext
+ if ${ac_cv_search_write_xtc+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_write_xtc+:} false; then :
-
+else
+ ac_cv_search_write_xtc=no
fi
-
-
- if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_XDRFILE 1" >>confdefs.h
-
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_XDRFILE" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_XDRFILE" >&2;}
- fi
-
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-if test $boost_graph == true ; then
-
- found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "boost/graph/graph_utility.hpp" "ac_cv_header_boost_graph_graph_utility_hpp" "$ac_includes_default"
-if test "x$ac_cv_header_boost_graph_graph_utility_hpp" = xyes; then :
-
- ac_fn_cxx_check_func "$LINENO" "exit" "ac_cv_func_exit"
-if test "x$ac_cv_func_exit" = xyes; then :
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_write_xtc" >&5
+$as_echo "$ac_cv_search_write_xtc" >&6; }
+ac_res=$ac_cv_search_write_xtc
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
found=ok
-else
+fi
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for exit in -lboost_graph" >&5
-$as_echo_n "checking for exit in -lboost_graph... " >&6; }
-if ${ac_cv_lib_boost_graph_exit+:} false; then :
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing write_xtc" >&5
+$as_echo_n "checking for library containing write_xtc... " >&6; }
+if ${ac_cv_search_write_xtc+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lboost_graph $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6636,131 +7983,202 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
#ifdef __cplusplus
extern "C"
#endif
-char exit ();
+char write_xtc ();
int
main ()
{
-return exit ();
+return write_xtc ();
;
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_boost_graph_exit=yes
-else
- ac_cv_lib_boost_graph_exit=no
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_write_xtc=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_boost_graph_exit" >&5
-$as_echo "$ac_cv_lib_boost_graph_exit" >&6; }
-if test "x$ac_cv_lib_boost_graph_exit" = xyes; then :
- LIBS="-lboost_graph $LIBS" && found=ok
+ conftest$ac_exeext
+ if ${ac_cv_search_write_xtc+:} false; then :
+ break
fi
+done
+if ${ac_cv_search_write_xtc+:} false; then :
- fi
-
-
+else
+ ac_cv_search_write_xtc=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_write_xtc" >&5
+$as_echo "$ac_cv_search_write_xtc" >&6; }
+ac_res=$ac_cv_search_write_xtc
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
fi
+ fi
+
fi
if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_BOOST_GRAPH 1" >>confdefs.h
+ $as_echo "#define __PLUMED_HAS_XDRFILE 1" >>confdefs.h
+ __PLUMED_HAS_XDRFILE=yes
else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_BOOST_GRAPH" >&5
-$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_BOOST_GRAPH" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_XDRFILE" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_XDRFILE" >&2;}
fi
fi
-if test $boost_serialization == true ; then
- found=ko
- ac_fn_cxx_check_header_mongrel "$LINENO" "boost/serialization/vector.hpp" "ac_cv_header_boost_serialization_vector_hpp" "$ac_includes_default"
-if test "x$ac_cv_header_boost_serialization_vector_hpp" = xyes; then :
-
- ac_fn_cxx_check_func "$LINENO" "main" "ac_cv_func_main"
-if test "x$ac_cv_func_main" = xyes; then :
- found=ok
-else
+if test $boost_graph == true ; then
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lboost_serialization" >&5
-$as_echo_n "checking for main in -lboost_serialization... " >&6; }
-if ${ac_cv_lib_boost_serialization_main+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lboost_serialization $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+ found=ko
+ __PLUMED_HAS_BOOST_GRAPH=no
+ if test "${libsearch}" == true ; then
+ testlibs=""
+ else
+ testlibs=""
+ fi
+ for testlib in "" $testlibs
+ do
+ save_LIBS="$LIBS"
+ if test -n "$testlib" ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking boost graph with -l$testlib" >&5
+$as_echo_n "checking boost graph with -l$testlib... " >&6; }
+ LIBS="-l$testlib $LIBS"
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking boost graph without extra libs" >&5
+$as_echo_n "checking boost graph without extra libs... " >&6; }
+ fi
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
-
+#include <boost/graph/graph_utility.hpp>
+#include <boost/graph/adjacency_matrix.hpp>
int
main ()
{
-return main ();
+ boost::adjacency_matrix<boost::directedS> a(1);
;
return 0;
}
+
_ACEOF
if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_boost_serialization_main=yes
+ found=ok
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
else
- ac_cv_lib_boost_serialization_main=no
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+
fi
rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_boost_serialization_main" >&5
-$as_echo "$ac_cv_lib_boost_serialization_main" >&6; }
-if test "x$ac_cv_lib_boost_serialization_main" = xyes; then :
- LIBS="-lboost_serialization $LIBS" && found=ok
-fi
-
- fi
+ if test $found == ok ; then
+ break
+ fi
+ LIBS="$save_LIBS"
+ done
+ if test $found == ok ; then
+ $as_echo "#define __PLUMED_HAS_BOOST_GRAPH 1" >>confdefs.h
+ __PLUMED_HAS_BOOST_GRAPH=yes
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_BOOST_GRAPH" >&5
+$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_BOOST_GRAPH" >&2;}
+ LIBS="$save_LIBS"
+ fi
fi
+if test $boost_serialization == true ; then
-fi
+ found=ko
+ __PLUMED_HAS_BOOST_SERIALIZATION=no
+ if test "${libsearch}" == true ; then
+ testlibs="boost_serialization boost_serialization-mt"
+ else
+ testlibs=""
+ fi
+ for testlib in "" $testlibs
+ do
+ save_LIBS="$LIBS"
+ if test -n "$testlib" ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking boost serialization with -l$testlib" >&5
+$as_echo_n "checking boost serialization with -l$testlib... " >&6; }
+ LIBS="-l$testlib $LIBS"
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking boost serialization without extra libs" >&5
+$as_echo_n "checking boost serialization without extra libs... " >&6; }
+ fi
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+#include <fstream>
+#include <boost/archive/text_oarchive.hpp>
+int main() {
+ std::ofstream ofs("filename");
+ boost::archive::text_oarchive oa(ofs);
+ return 0;
+}
+_ACEOF
+if ac_fn_cxx_try_link "$LINENO"; then :
+ found=ok
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ if test $found == ok ; then
+ break
+ fi
+ LIBS="$save_LIBS"
+ done
if test $found == ok ; then
$as_echo "#define __PLUMED_HAS_BOOST_SERIALIZATION 1" >>confdefs.h
+ __PLUMED_HAS_BOOST_SERIALIZATION=yes
else
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_BOOST_SERIALIZATION" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_BOOST_SERIALIZATION" >&5
$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_BOOST_SERIALIZATION" >&2;}
+ LIBS="$save_LIBS"
fi
+# notice: macports install libraries with -mt suffix
fi
+
if test $fftw == true ; then
found=ko
+ __PLUMED_HAS_FFTW=no
ac_fn_cxx_check_header_mongrel "$LINENO" "fftw3.h" "ac_cv_header_fftw3_h" "$ac_includes_default"
if test "x$ac_cv_header_fftw3_h" = xyes; then :
- ac_fn_cxx_check_func "$LINENO" "fftw_execute" "ac_cv_func_fftw_execute"
-if test "x$ac_cv_func_fftw_execute" = xyes; then :
- found=ok
-else
- if test "${libsearch}" == true ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for fftw_execute in -lfftw3" >&5
-$as_echo_n "checking for fftw_execute in -lfftw3... " >&6; }
-if ${ac_cv_lib_fftw3_fftw_execute+:} false; then :
+ if test "${libsearch}" == true ; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing fftw_execute" >&5
+$as_echo_n "checking for library containing fftw_execute... " >&6; }
+if ${ac_cv_search_fftw_execute+:} false; then :
$as_echo_n "(cached) " >&6
else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lfftw3 $LIBS"
+ ac_func_search_save_LIBS=$LIBS
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -6779,33 +8197,105 @@ return fftw_execute ();
return 0;
}
_ACEOF
-if ac_fn_cxx_try_link "$LINENO"; then :
- ac_cv_lib_fftw3_fftw_execute=yes
-else
- ac_cv_lib_fftw3_fftw_execute=no
+for ac_lib in '' fftw3; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_fftw_execute=$ac_res
fi
rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
+ conftest$ac_exeext
+ if ${ac_cv_search_fftw_execute+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_fftw_execute+:} false; then :
+
+else
+ ac_cv_search_fftw_execute=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_fftw3_fftw_execute" >&5
-$as_echo "$ac_cv_lib_fftw3_fftw_execute" >&6; }
-if test "x$ac_cv_lib_fftw3_fftw_execute" = xyes; then :
- LIBS="-lfftw3 $LIBS" && found=ok
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_fftw_execute" >&5
+$as_echo "$ac_cv_search_fftw_execute" >&6; }
+ac_res=$ac_cv_search_fftw_execute
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
fi
- fi
+ else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing fftw_execute" >&5
+$as_echo_n "checking for library containing fftw_execute... " >&6; }
+if ${ac_cv_search_fftw_execute+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_func_search_save_LIBS=$LIBS
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char fftw_execute ();
+int
+main ()
+{
+return fftw_execute ();
+ ;
+ return 0;
+}
+_ACEOF
+for ac_lib in '' ; do
+ if test -z "$ac_lib"; then
+ ac_res="none required"
+ else
+ ac_res=-l$ac_lib
+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ fi
+ if ac_fn_cxx_try_link "$LINENO"; then :
+ ac_cv_search_fftw_execute=$ac_res
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext
+ if ${ac_cv_search_fftw_execute+:} false; then :
+ break
+fi
+done
+if ${ac_cv_search_fftw_execute+:} false; then :
+else
+ ac_cv_search_fftw_execute=no
+fi
+rm conftest.$ac_ext
+LIBS=$ac_func_search_save_LIBS
fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_fftw_execute" >&5
+$as_echo "$ac_cv_search_fftw_execute" >&6; }
+ac_res=$ac_cv_search_fftw_execute
+if test "$ac_res" != no; then :
+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+ found=ok
+fi
+
+ fi
fi
if test $found == ok ; then
- $as_echo "#define __PLUMED_HAS_FFTW 1" >>confdefs.h
+ $as_echo "#define __PLUMED_HAS_FFTW 1" >>confdefs.h
+ __PLUMED_HAS_FFTW=yes
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cannot enable __PLUMED_HAS_FFTW" >&5
$as_echo "$as_me: WARNING: cannot enable __PLUMED_HAS_FFTW" >&2;}
diff --git a/configure.ac b/configure.ac
index 75532948e04c4a0c5fc926090846568a28c163c9..cceace16f362b272953ae580ad25b0573d76af0b 100644
--- a/configure.ac
+++ b/configure.ac
@@ -80,28 +80,76 @@ AC_DEFUN([PLUMED_CHECK_LDFLAGS], [
[AC_MSG_RESULT([no]); LDFLAGS="$save_LDFLAGS"])
])
+# PLUMED_SEARCH_LIBS(function,search-libs[,action-if-found][,action-if-not-found][,other-libraries])
+# same as AC_SEARCH_LIBS, but does not try any library unless $libsearch==true
+# Should be used instead of AC_SEARCH_LIBS in order to make --disable-libsearch work correctly
+AC_DEFUN([PLUMED_SEARCH_LIBS], [
+ if test "${libsearch}" == true ; then
+ AC_SEARCH_LIBS([$1],[$2],[$3],[$4],[$5])
+ else
+ AC_SEARCH_LIBS([$1],[],[$3],[$4],[])
+ fi
+])
+
# PLUMED_CHECK_PACKAGE(header,function,define[,library])
# first we check if the header is present. if so, we check if the given function can be found.
# if it cannot be found and the fourth argument (library) has been supplied, we look for it
# in the library. finally, we set the define flag
AC_DEFUN([PLUMED_CHECK_PACKAGE], [
found=ko
+ $3=no
AC_CHECK_HEADER( [$1],[
- AC_CHECK_FUNC( [$2], [found=ok],
- m4_ifnblank([$4],[
- if test "${libsearch}" == true ; then
- AC_CHECK_LIB( [$4], [$2], [LIBS="-l$4 $LIBS" && found=ok])
- fi
- ])
- )
+ PLUMED_SEARCH_LIBS([$2],[$4],[found=ok])
])
if test $found == ok ; then
- AC_DEFINE([$3])
+ AC_DEFINE([$3])
+ $3=yes
else
AC_MSG_WARN([cannot enable $3])
fi
])
+# PLUMED_CHECK_CXX_PACKAGE(name,program,define[,library])
+# Similar to PLUMED_CHECK_PACKAGE but suitable for checking C++ libraries.
+# Name is just a string used in the configure log
+# program is a string containing a short C++ program that should compiled.
+# If present and necessary, library is also linked.
+AC_DEFUN([PLUMED_CHECK_CXX_PACKAGE], [
+ found=ko
+ $3=no
+ if test "${libsearch}" == true ; then
+ testlibs="$4"
+ else
+ testlibs=""
+ fi
+ for testlib in "" $testlibs
+ do
+ save_LIBS="$LIBS"
+ if test -n "$testlib" ; then
+ AC_MSG_CHECKING([$1 with -l$testlib])
+ LIBS="-l$testlib $LIBS"
+ else
+ AC_MSG_CHECKING([$1 without extra libs])
+ fi
+ AC_LINK_IFELSE([AC_LANG_SOURCE([$2])],
+ [found=ok]
+ [AC_MSG_RESULT([yes])],
+ [AC_MSG_RESULT([no])]
+ )
+ if test $found == ok ; then
+ break
+ fi
+ LIBS="$save_LIBS"
+ done
+ if test $found == ok ; then
+ AC_DEFINE([$3])
+ $3=yes
+ else
+ AC_MSG_WARN([cannot enable $3])
+ LIBS="$save_LIBS"
+ fi
+])
+
##################################################################
AC_MSG_NOTICE([Optional modules are disabled by default])
@@ -354,10 +402,8 @@ AC_MSG_NOTICE([Now we will check compulsory headers and libraries])
AC_CHECK_HEADER([dirent.h], [ ], [AC_MSG_ERROR([compulsory header not found])] )
AC_CHECK_FUNC( [readdir], [ ], [AC_MSG_ERROR([compulsory function not found])] )
-save_LIBS="$LIBS"
# Then check for blas. This is a bit complicated because we want to allow
# either the version with underscore or the one without
-# If they are not found in the normal search path, we repeat the search with -lblas
blas_found=
lapack_found=
@@ -371,21 +417,14 @@ fi
# first look for blas
if test "$external_blas" == true ; then
-AC_CHECK_FUNC( [dgemv], [blas_found=nounderscore], [
-AC_CHECK_FUNC( [dgemv_],[blas_found=underscore], [
-if test "${libsearch}" == true ; then
- AC_CHECK_LIB( [blas],[dgemv], [LIBS="-lblas $LIBS"] [blas_found=nounderscore], [
- AC_CHECK_LIB( [blas],[dgemv_], [LIBS="-lblas $LIBS"] [blas_found=underscore]
-) ])
-fi
-]) ])
+ PLUMED_SEARCH_LIBS([dgemv],[blas],[blas_found=nounderscore], [
+ PLUMED_SEARCH_LIBS([dgemv_],[blas],[blas_found=underscore])
+ ])
fi
# if not found, then use internal lapack and blas
if test -z "$blas_found" ; then
AC_MSG_WARN([using internal lapack and blas, could be inefficient])
-LIBS="$save_LIBS"
-
fi
# if found, also look for external lapack
@@ -393,26 +432,18 @@ if test -n "$blas_found" ; then
AC_DEFINE([__PLUMED_HAS_EXTERNAL_BLAS])
-save_LIBS="$LIBS"
-
if test "$external_lapack" == true ; then
# Then we look for lapack using same underscoring
case "$blas_found" in
(underscore) search_for=dsyevr_ ;;
(nounderscore) search_for=dsyevr ;;
esac
-AC_CHECK_FUNC( [$search_for], [lapack_found=$blas_found], [
-if test "${libsearch}" == true ; then
- AC_CHECK_LIB( [lapack],[$search_for], [LIBS="-llapack $LIBS"] [lapack_found=yes])
-fi
-])
+PLUMED_SEARCH_LIBS( [$search_for],[lapack],[lapack_found=yes])
fi
# if not found, then use internal lapack with external blas
if test -z "$lapack_found" ; then
AC_MSG_WARN([using internal lapack, could be inefficient])
-LIBS="$save_LIBS"
-
else
AC_DEFINE([__PLUMED_HAS_EXTERNAL_LAPACK])
fi
@@ -510,26 +541,16 @@ if test $molfile_plugins == true ; then
# We always have molfile, now
AC_DEFINE([__PLUMED_HAS_MOLFILE_PLUGINS])
-found=ko
-if test "$external_molfile_plugins" == true ; then
- AC_CHECK_HEADER( [libmolfile_plugin.h], [
- AC_CHECK_FUNC( [molfile_dcdplugin_init], [found=ok], [
- if test "${libsearch}" == true ; then
- AC_CHECK_LIB( [molfile_plugin],[molfile_dcdplugin_init], [LIBS="-lmolfile_plugin $LIBS"] [found=ok])
- fi
- ])
- ])
-fi
-if test $found == ko ; then
- AC_MSG_WARN([using internal molfile_plugins, which only support dcd/xtc/trr/trj/crd files])
-else
- AC_DEFINE([__PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS])
-fi
-
+ if test "$external_molfile_plugins" == true ; then
+ PLUMED_CHECK_PACKAGE([libmolfile_plugin.h],[molfile_dcdplugin_init],[__PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS],molfile_plugin)
+ if test "$__PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS" != yes ; then
+ AC_MSG_WARN([using internal molfile_plugins, which only support dcd/xtc/trr/trj/crd files])
+ else
+ AC_DEFINE([__PLUMED_HAS_EXTERNAL_MOLFILE_PLUGINS])
+ fi
+ fi
fi
-
-
# this is special and is also attached to STATIC_LIBS
# this flag should be used also when linking MD engines to allow plumed
# to be loaded later
@@ -569,42 +590,51 @@ if test $zlib == true ; then
PLUMED_CHECK_PACKAGE([zlib.h],[gzopen],[__PLUMED_HAS_ZLIB],[z])
fi
-save_LIBS="$LIBS"
-
if test $gsl == true ; then
found=ko
- AC_CHECK_FUNC( [cblas_dgemv], [found=ok], [
- if test "${libsearch}" == true ; then
- AC_CHECK_LIB( [gslcblas],[cblas_dgemv], [LIBS="-lgslcblas $LIBS"] [found=ok])
- fi
- ])
- if test $found == ok ; then
- found=ko
+ PLUMED_SEARCH_LIBS([cblas_dgemv],[gslcblas], [
AC_CHECK_HEADER( [gsl/gsl_vector.h], [
- AC_CHECK_FUNC( [gsl_vector_alloc], [found=ok], [
- if test "${libsearch}" == true ; then
- AC_CHECK_LIB( [gsl],[gsl_vector_alloc], [LIBS="-lgsl $LIBS"] [found=ok])
- fi
- ])
+ PLUMED_SEARCH_LIBS([gsl_vector_alloc],[gsl],[found=ok])
])
- fi
+ ])
if test $found == ok ; then
AC_DEFINE([__PLUMED_HAS_GSL])
else
- LIBS="$save_LIBS"
- AC_MSG_WARN([cannot enable __PLUMED_HAS_GSL])
+ AC_MSG_WARN([cannot enable __PLUMED_HAS_GSL])
fi
fi
if test $xdrfile == true ; then
PLUMED_CHECK_PACKAGE([xdrfile/xdrfile_xtc.h],[write_xtc],[__PLUMED_HAS_XDRFILE],[xdrfile])
fi
+
if test $boost_graph == true ; then
- PLUMED_CHECK_PACKAGE([boost/graph/graph_utility.hpp],[exit],[__PLUMED_HAS_BOOST_GRAPH],[boost_graph])
+ PLUMED_CHECK_CXX_PACKAGE([boost graph],[
+#include <boost/graph/graph_utility.hpp>
+#include <boost/graph/adjacency_matrix.hpp>
+int
+main ()
+{
+ boost::adjacency_matrix<boost::directedS> a(1);
+ ;
+ return 0;
+}
+ ], [__PLUMED_HAS_BOOST_GRAPH])
fi
+
if test $boost_serialization == true ; then
- PLUMED_CHECK_PACKAGE([boost/serialization/vector.hpp],[main],[__PLUMED_HAS_BOOST_SERIALIZATION],[boost_serialization])
+ PLUMED_CHECK_CXX_PACKAGE([boost serialization],[
+#include <fstream>
+#include <boost/archive/text_oarchive.hpp>
+int main() {
+ std::ofstream ofs("filename");
+ boost::archive::text_oarchive oa(ofs);
+ return 0;
+}
+ ], [__PLUMED_HAS_BOOST_SERIALIZATION],[boost_serialization boost_serialization-mt])
+# notice: macports install libraries with -mt suffix
fi
+
if test $fftw == true ; then
PLUMED_CHECK_PACKAGE([fftw3.h],[fftw_execute],[__PLUMED_HAS_FFTW],[fftw3])
fi