From e88c54c572a7ff6b2b56a1c6eb3cffc763b4c80a Mon Sep 17 00:00:00 2001
From: Giovanni Bussi <giovanni.bussi@gmail.com>
Date: Mon, 10 Dec 2012 11:23:31 +0100
Subject: [PATCH] In colvar/bias/function/cltools files renamed according to
new (short) class name
---
src/bias/{BiasExternal.cpp => External.cpp} | 0
src/bias/{BiasLWalls.cpp => LWalls.cpp} | 0
src/bias/{BiasMetaD.cpp => MetaD.cpp} | 0
src/bias/{BiasMovingRestraint.cpp => MovingRestraint.cpp} | 0
src/bias/{BiasRatchet.cpp => Ratchet.cpp} | 0
src/bias/{BiasRestraint.cpp => Restraint.cpp} | 0
src/bias/{BiasUWalls.cpp => UWalls.cpp} | 0
src/bias/{BiasValue.cpp => Value.cpp} | 0
src/cltools/{CLToolDriver.cpp => Driver.cpp} | 0
src/cltools/{CLToolInfo.cpp => Info.cpp} | 0
src/cltools/{CLToolManual.cpp => Manual.cpp} | 0
src/cltools/{CLToolSimpleMD.cpp => SimpleMD.cpp} | 0
.../{CLToolTemplateGenerator.cpp => TemplateGenerator.cpp} | 0
src/colvar/{ColvarAngle.cpp => Angle.cpp} | 0
src/colvar/{ColvarContactMap.cpp => ContactMap.cpp} | 0
src/colvar/{ColvarCoordination.cpp => Coordination.cpp} | 0
src/colvar/{ColvarDRMSD.cpp => DRMSD.cpp} | 0
src/colvar/{ColvarDipole.cpp => Dipole.cpp} | 0
src/colvar/{ColvarDistance.cpp => Distance.cpp} | 0
src/colvar/{ColvarEnergy.cpp => Energy.cpp} | 0
src/colvar/{ColvarGyration.cpp => Gyration.cpp} | 0
src/colvar/{ColvarPathMSD.cpp => PathMSD.cpp} | 2 +-
src/colvar/{ColvarPathMSDBase.cpp => PathMSDBase.cpp} | 2 +-
src/colvar/{ColvarPathMSDBase.h => PathMSDBase.h} | 4 ++--
src/colvar/{ColvarPropertyMap.cpp => PropertyMap.cpp} | 2 +-
src/colvar/{ColvarRMSD.cpp => RMSD.cpp} | 0
src/colvar/{ColvarTemplate.cpp => Template.cpp} | 0
src/colvar/{ColvarTorsion.cpp => Torsion.cpp} | 0
src/colvar/{ColvarVolume.cpp => Volume.cpp} | 0
src/function/{FunctionCombine.cpp => Combine.cpp} | 0
src/function/{FunctionFuncPathMSD.cpp => FuncPathMSD.cpp} | 0
src/function/{FunctionMatheval.cpp => Matheval.cpp} | 0
src/function/{FunctionPiecewise.cpp => Piecewise.cpp} | 0
src/function/{FunctionSort.cpp => Sort.cpp} | 0
src/function/{FunctionTarget.cpp => Target.cpp} | 0
35 files changed, 5 insertions(+), 5 deletions(-)
rename src/bias/{BiasExternal.cpp => External.cpp} (100%)
rename src/bias/{BiasLWalls.cpp => LWalls.cpp} (100%)
rename src/bias/{BiasMetaD.cpp => MetaD.cpp} (100%)
rename src/bias/{BiasMovingRestraint.cpp => MovingRestraint.cpp} (100%)
rename src/bias/{BiasRatchet.cpp => Ratchet.cpp} (100%)
rename src/bias/{BiasRestraint.cpp => Restraint.cpp} (100%)
rename src/bias/{BiasUWalls.cpp => UWalls.cpp} (100%)
rename src/bias/{BiasValue.cpp => Value.cpp} (100%)
rename src/cltools/{CLToolDriver.cpp => Driver.cpp} (100%)
rename src/cltools/{CLToolInfo.cpp => Info.cpp} (100%)
rename src/cltools/{CLToolManual.cpp => Manual.cpp} (100%)
rename src/cltools/{CLToolSimpleMD.cpp => SimpleMD.cpp} (100%)
rename src/cltools/{CLToolTemplateGenerator.cpp => TemplateGenerator.cpp} (100%)
rename src/colvar/{ColvarAngle.cpp => Angle.cpp} (100%)
rename src/colvar/{ColvarContactMap.cpp => ContactMap.cpp} (100%)
rename src/colvar/{ColvarCoordination.cpp => Coordination.cpp} (100%)
rename src/colvar/{ColvarDRMSD.cpp => DRMSD.cpp} (100%)
rename src/colvar/{ColvarDipole.cpp => Dipole.cpp} (100%)
rename src/colvar/{ColvarDistance.cpp => Distance.cpp} (100%)
rename src/colvar/{ColvarEnergy.cpp => Energy.cpp} (100%)
rename src/colvar/{ColvarGyration.cpp => Gyration.cpp} (100%)
rename src/colvar/{ColvarPathMSD.cpp => PathMSD.cpp} (99%)
rename src/colvar/{ColvarPathMSDBase.cpp => PathMSDBase.cpp} (99%)
rename src/colvar/{ColvarPathMSDBase.h => PathMSDBase.h} (96%)
rename src/colvar/{ColvarPropertyMap.cpp => PropertyMap.cpp} (99%)
rename src/colvar/{ColvarRMSD.cpp => RMSD.cpp} (100%)
rename src/colvar/{ColvarTemplate.cpp => Template.cpp} (100%)
rename src/colvar/{ColvarTorsion.cpp => Torsion.cpp} (100%)
rename src/colvar/{ColvarVolume.cpp => Volume.cpp} (100%)
rename src/function/{FunctionCombine.cpp => Combine.cpp} (100%)
rename src/function/{FunctionFuncPathMSD.cpp => FuncPathMSD.cpp} (100%)
rename src/function/{FunctionMatheval.cpp => Matheval.cpp} (100%)
rename src/function/{FunctionPiecewise.cpp => Piecewise.cpp} (100%)
rename src/function/{FunctionSort.cpp => Sort.cpp} (100%)
rename src/function/{FunctionTarget.cpp => Target.cpp} (100%)
diff --git a/src/bias/BiasExternal.cpp b/src/bias/External.cpp
similarity index 100%
rename from src/bias/BiasExternal.cpp
rename to src/bias/External.cpp
diff --git a/src/bias/BiasLWalls.cpp b/src/bias/LWalls.cpp
similarity index 100%
rename from src/bias/BiasLWalls.cpp
rename to src/bias/LWalls.cpp
diff --git a/src/bias/BiasMetaD.cpp b/src/bias/MetaD.cpp
similarity index 100%
rename from src/bias/BiasMetaD.cpp
rename to src/bias/MetaD.cpp
diff --git a/src/bias/BiasMovingRestraint.cpp b/src/bias/MovingRestraint.cpp
similarity index 100%
rename from src/bias/BiasMovingRestraint.cpp
rename to src/bias/MovingRestraint.cpp
diff --git a/src/bias/BiasRatchet.cpp b/src/bias/Ratchet.cpp
similarity index 100%
rename from src/bias/BiasRatchet.cpp
rename to src/bias/Ratchet.cpp
diff --git a/src/bias/BiasRestraint.cpp b/src/bias/Restraint.cpp
similarity index 100%
rename from src/bias/BiasRestraint.cpp
rename to src/bias/Restraint.cpp
diff --git a/src/bias/BiasUWalls.cpp b/src/bias/UWalls.cpp
similarity index 100%
rename from src/bias/BiasUWalls.cpp
rename to src/bias/UWalls.cpp
diff --git a/src/bias/BiasValue.cpp b/src/bias/Value.cpp
similarity index 100%
rename from src/bias/BiasValue.cpp
rename to src/bias/Value.cpp
diff --git a/src/cltools/CLToolDriver.cpp b/src/cltools/Driver.cpp
similarity index 100%
rename from src/cltools/CLToolDriver.cpp
rename to src/cltools/Driver.cpp
diff --git a/src/cltools/CLToolInfo.cpp b/src/cltools/Info.cpp
similarity index 100%
rename from src/cltools/CLToolInfo.cpp
rename to src/cltools/Info.cpp
diff --git a/src/cltools/CLToolManual.cpp b/src/cltools/Manual.cpp
similarity index 100%
rename from src/cltools/CLToolManual.cpp
rename to src/cltools/Manual.cpp
diff --git a/src/cltools/CLToolSimpleMD.cpp b/src/cltools/SimpleMD.cpp
similarity index 100%
rename from src/cltools/CLToolSimpleMD.cpp
rename to src/cltools/SimpleMD.cpp
diff --git a/src/cltools/CLToolTemplateGenerator.cpp b/src/cltools/TemplateGenerator.cpp
similarity index 100%
rename from src/cltools/CLToolTemplateGenerator.cpp
rename to src/cltools/TemplateGenerator.cpp
diff --git a/src/colvar/ColvarAngle.cpp b/src/colvar/Angle.cpp
similarity index 100%
rename from src/colvar/ColvarAngle.cpp
rename to src/colvar/Angle.cpp
diff --git a/src/colvar/ColvarContactMap.cpp b/src/colvar/ContactMap.cpp
similarity index 100%
rename from src/colvar/ColvarContactMap.cpp
rename to src/colvar/ContactMap.cpp
diff --git a/src/colvar/ColvarCoordination.cpp b/src/colvar/Coordination.cpp
similarity index 100%
rename from src/colvar/ColvarCoordination.cpp
rename to src/colvar/Coordination.cpp
diff --git a/src/colvar/ColvarDRMSD.cpp b/src/colvar/DRMSD.cpp
similarity index 100%
rename from src/colvar/ColvarDRMSD.cpp
rename to src/colvar/DRMSD.cpp
diff --git a/src/colvar/ColvarDipole.cpp b/src/colvar/Dipole.cpp
similarity index 100%
rename from src/colvar/ColvarDipole.cpp
rename to src/colvar/Dipole.cpp
diff --git a/src/colvar/ColvarDistance.cpp b/src/colvar/Distance.cpp
similarity index 100%
rename from src/colvar/ColvarDistance.cpp
rename to src/colvar/Distance.cpp
diff --git a/src/colvar/ColvarEnergy.cpp b/src/colvar/Energy.cpp
similarity index 100%
rename from src/colvar/ColvarEnergy.cpp
rename to src/colvar/Energy.cpp
diff --git a/src/colvar/ColvarGyration.cpp b/src/colvar/Gyration.cpp
similarity index 100%
rename from src/colvar/ColvarGyration.cpp
rename to src/colvar/Gyration.cpp
diff --git a/src/colvar/ColvarPathMSD.cpp b/src/colvar/PathMSD.cpp
similarity index 99%
rename from src/colvar/ColvarPathMSD.cpp
rename to src/colvar/PathMSD.cpp
index e574362ad..5ea9826ba 100644
--- a/src/colvar/ColvarPathMSD.cpp
+++ b/src/colvar/PathMSD.cpp
@@ -19,7 +19,7 @@
You should have received a copy of the GNU Lesser General Public License
along with plumed. If not, see <http://www.gnu.org/licenses/>.
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
-#include "ColvarPathMSDBase.h"
+#include "PathMSDBase.h"
#include "core/PlumedMain.h"
using namespace std;
diff --git a/src/colvar/ColvarPathMSDBase.cpp b/src/colvar/PathMSDBase.cpp
similarity index 99%
rename from src/colvar/ColvarPathMSDBase.cpp
rename to src/colvar/PathMSDBase.cpp
index 80b41fd6f..fb8a63151 100644
--- a/src/colvar/ColvarPathMSDBase.cpp
+++ b/src/colvar/PathMSDBase.cpp
@@ -22,7 +22,7 @@
#include <cmath>
#include "Colvar.h"
-#include "ColvarPathMSDBase.h"
+#include "PathMSDBase.h"
#include "ActionRegister.h"
#include "core/PlumedMain.h"
diff --git a/src/colvar/ColvarPathMSDBase.h b/src/colvar/PathMSDBase.h
similarity index 96%
rename from src/colvar/ColvarPathMSDBase.h
rename to src/colvar/PathMSDBase.h
index 6fe8b7008..66eced1c0 100644
--- a/src/colvar/ColvarPathMSDBase.h
+++ b/src/colvar/PathMSDBase.h
@@ -19,8 +19,8 @@
You should have received a copy of the GNU Lesser General Public License
along with plumed. If not, see <http://www.gnu.org/licenses/>.
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
-#ifndef __PLUMED_colvar_ColvarPathMSDBase_h
-#define __PLUMED_colvar_ColvarPathMSDBase_h
+#ifndef __PLUMED_colvar_PathMSDBase_h
+#define __PLUMED_colvar_PathMSDBase_h
#include <cmath>
diff --git a/src/colvar/ColvarPropertyMap.cpp b/src/colvar/PropertyMap.cpp
similarity index 99%
rename from src/colvar/ColvarPropertyMap.cpp
rename to src/colvar/PropertyMap.cpp
index f7caa5941..a096a24c6 100644
--- a/src/colvar/ColvarPropertyMap.cpp
+++ b/src/colvar/PropertyMap.cpp
@@ -19,7 +19,7 @@
You should have received a copy of the GNU Lesser General Public License
along with plumed. If not, see <http://www.gnu.org/licenses/>.
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
-#include "ColvarPathMSDBase.h"
+#include "PathMSDBase.h"
#include "core/PlumedMain.h"
using namespace std;
diff --git a/src/colvar/ColvarRMSD.cpp b/src/colvar/RMSD.cpp
similarity index 100%
rename from src/colvar/ColvarRMSD.cpp
rename to src/colvar/RMSD.cpp
diff --git a/src/colvar/ColvarTemplate.cpp b/src/colvar/Template.cpp
similarity index 100%
rename from src/colvar/ColvarTemplate.cpp
rename to src/colvar/Template.cpp
diff --git a/src/colvar/ColvarTorsion.cpp b/src/colvar/Torsion.cpp
similarity index 100%
rename from src/colvar/ColvarTorsion.cpp
rename to src/colvar/Torsion.cpp
diff --git a/src/colvar/ColvarVolume.cpp b/src/colvar/Volume.cpp
similarity index 100%
rename from src/colvar/ColvarVolume.cpp
rename to src/colvar/Volume.cpp
diff --git a/src/function/FunctionCombine.cpp b/src/function/Combine.cpp
similarity index 100%
rename from src/function/FunctionCombine.cpp
rename to src/function/Combine.cpp
diff --git a/src/function/FunctionFuncPathMSD.cpp b/src/function/FuncPathMSD.cpp
similarity index 100%
rename from src/function/FunctionFuncPathMSD.cpp
rename to src/function/FuncPathMSD.cpp
diff --git a/src/function/FunctionMatheval.cpp b/src/function/Matheval.cpp
similarity index 100%
rename from src/function/FunctionMatheval.cpp
rename to src/function/Matheval.cpp
diff --git a/src/function/FunctionPiecewise.cpp b/src/function/Piecewise.cpp
similarity index 100%
rename from src/function/FunctionPiecewise.cpp
rename to src/function/Piecewise.cpp
diff --git a/src/function/FunctionSort.cpp b/src/function/Sort.cpp
similarity index 100%
rename from src/function/FunctionSort.cpp
rename to src/function/Sort.cpp
diff --git a/src/function/FunctionTarget.cpp b/src/function/Target.cpp
similarity index 100%
rename from src/function/FunctionTarget.cpp
rename to src/function/Target.cpp
--
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