From e389621cd8c091c0c6bcd14c59cc5d8055e7f1ac Mon Sep 17 00:00:00 2001 From: Giovanni Bussi <giovanni.bussi@gmail.com> Date: Sun, 7 Jun 2015 20:29:47 +0200 Subject: [PATCH] Update headers and online manual [makedoc] --- src/colvar/Angle.cpp | 2 +- src/colvar/DRMSD.cpp | 2 +- src/colvar/Distance.cpp | 2 +- src/colvar/MultiRMSD.cpp | 2 +- src/colvar/PCARMSD.cpp | 2 +- src/colvar/RMSD.cpp | 2 +- src/colvar/Torsion.cpp | 2 +- src/crystallization/DFSBasic.cpp | 2 +- src/crystallization/DFSClusterRadius.cpp | 2 +- src/crystallization/DFSClustering.h | 6 +++--- src/crystallization/DFSMaxSize.cpp | 2 +- src/crystallization/DFSNumberOfClusters.cpp | 2 +- src/crystallization/Gradient.cpp | 2 +- src/crystallization/GradientVessel.cpp | 2 +- src/crystallization/OrientationSphere.h | 2 +- src/crystallization/SMAC.cpp | 2 +- src/crystallization/Steinhardt.h | 2 +- src/function/Target.cpp | 2 +- src/generic/DumpAtoms.cpp | 2 +- src/generic/DumpDerivatives.cpp | 2 +- src/generic/DumpForces.cpp | 2 +- src/generic/DumpProjections.cpp | 2 +- src/generic/Print.cpp | 2 +- src/generic/Read.cpp | 2 +- src/generic/WrapAround.cpp | 2 +- src/manyrestraints/ManyRestraintsBase.cpp | 2 +- src/mapping/Mapping.cpp | 2 +- src/mapping/Mapping.h | 2 +- src/mapping/PCAVars.cpp | 4 ++-- src/mapping/SpathVessel.cpp | 2 +- src/multicolvar/ActionVolume.cpp | 2 +- src/multicolvar/ActionVolume.h | 2 +- src/multicolvar/AdjacencyMatrixVessel.cpp | 2 +- src/multicolvar/AdjacencyMatrixVessel.h | 2 +- src/multicolvar/AtomValuePack.cpp | 2 +- src/multicolvar/AtomValuePack.h | 2 +- src/multicolvar/BridgedMultiColvarFunction.h | 2 +- src/multicolvar/CatomPack.h | 2 +- src/multicolvar/MultiColvar.h | 2 +- src/multicolvar/MultiColvarBase.cpp | 2 +- src/multicolvar/MultiColvarBase.h | 2 +- src/multicolvar/MultiColvarFunction.cpp | 2 +- src/multicolvar/MultiColvarFunction.h | 2 +- src/multicolvar/Sprint.cpp | 2 +- src/multicolvar/VolumeCavity.cpp | 2 +- src/multicolvar/VolumeInCylinder.cpp | 2 +- src/multicolvar/VolumeTetrapore.cpp | 2 +- src/multicolvar/XDistances.cpp | 2 +- src/multicolvar/XYDistances.cpp | 2 +- src/reference/Direction.cpp | 2 +- src/reference/EuclideanDistance.cpp | 2 +- src/reference/MultiDomainRMSD.h | 2 +- src/reference/OptimalRMSD.cpp | 2 +- src/reference/ReferenceConfiguration.cpp | 2 +- src/reference/ReferenceValuePack.cpp | 2 +- src/reference/ReferenceValuePack.h | 2 +- src/reference/SimpleRMSD.cpp | 2 +- src/reference/SingleDomainRMSD.h | 2 +- src/secondarystructure/SecondaryStructureRMSD.h | 2 +- src/tools/BiasRepresentation.cpp | 2 +- src/tools/DynamicList.h | 2 +- src/tools/KernelFunctions.cpp | 2 +- src/tools/MultiValue.cpp | 2 +- src/tools/MultiValue.h | 2 +- src/tools/PDB.cpp | 2 +- src/tools/PDB.h | 2 +- src/tools/Pbc.h | 2 +- src/tools/RMSD.cpp | 2 +- src/tools/RMSD.h | 2 +- src/tools/SwitchingFunction.cpp | 2 +- src/tools/SwitchingFunction.h | 2 +- src/vesselbase/ActionWithVessel.cpp | 2 +- src/vesselbase/ActionWithVessel.h | 2 +- src/vesselbase/BridgeVessel.h | 2 +- src/vesselbase/FunctionVessel.h | 2 +- src/vesselbase/StoreDataVessel.cpp | 2 +- src/vesselbase/StoreDataVessel.h | 2 +- 77 files changed, 80 insertions(+), 80 deletions(-) diff --git a/src/colvar/Angle.cpp b/src/colvar/Angle.cpp index 24542ac32..1c2065e8c 100644 --- a/src/colvar/Angle.cpp +++ b/src/colvar/Angle.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/colvar/DRMSD.cpp b/src/colvar/DRMSD.cpp index fa397f9de..9a41f57c5 100644 --- a/src/colvar/DRMSD.cpp +++ b/src/colvar/DRMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/colvar/Distance.cpp b/src/colvar/Distance.cpp index 0c11c1130..40fa4d76c 100644 --- a/src/colvar/Distance.cpp +++ b/src/colvar/Distance.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/colvar/MultiRMSD.cpp b/src/colvar/MultiRMSD.cpp index 15f853122..aeab313c8 100644 --- a/src/colvar/MultiRMSD.cpp +++ b/src/colvar/MultiRMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/colvar/PCARMSD.cpp b/src/colvar/PCARMSD.cpp index c5fffc32a..c4a249442 100644 --- a/src/colvar/PCARMSD.cpp +++ b/src/colvar/PCARMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/colvar/RMSD.cpp b/src/colvar/RMSD.cpp index c060112dc..352007ada 100644 --- a/src/colvar/RMSD.cpp +++ b/src/colvar/RMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/colvar/Torsion.cpp b/src/colvar/Torsion.cpp index 2ba4a239a..f4e2b2fe7 100644 --- a/src/colvar/Torsion.cpp +++ b/src/colvar/Torsion.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/DFSBasic.cpp b/src/crystallization/DFSBasic.cpp index bfeec7cac..8a423f568 100644 --- a/src/crystallization/DFSBasic.cpp +++ b/src/crystallization/DFSBasic.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/DFSClusterRadius.cpp b/src/crystallization/DFSClusterRadius.cpp index 05dfaf453..b39fd30bc 100644 --- a/src/crystallization/DFSClusterRadius.cpp +++ b/src/crystallization/DFSClusterRadius.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/DFSClustering.h b/src/crystallization/DFSClustering.h index 8b3781080..09efb83f4 100644 --- a/src/crystallization/DFSClustering.h +++ b/src/crystallization/DFSClustering.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. @@ -10,12 +10,12 @@ it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. - + You should have received a copy of the GNU Lesser General Public License along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ diff --git a/src/crystallization/DFSMaxSize.cpp b/src/crystallization/DFSMaxSize.cpp index 5f9f99e88..877ced320 100644 --- a/src/crystallization/DFSMaxSize.cpp +++ b/src/crystallization/DFSMaxSize.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/DFSNumberOfClusters.cpp b/src/crystallization/DFSNumberOfClusters.cpp index 813c6ad84..e11f81f42 100644 --- a/src/crystallization/DFSNumberOfClusters.cpp +++ b/src/crystallization/DFSNumberOfClusters.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/Gradient.cpp b/src/crystallization/Gradient.cpp index 0be0f1999..f03219f01 100644 --- a/src/crystallization/Gradient.cpp +++ b/src/crystallization/Gradient.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/GradientVessel.cpp b/src/crystallization/GradientVessel.cpp index 753c76ba7..1cb2c0d93 100644 --- a/src/crystallization/GradientVessel.cpp +++ b/src/crystallization/GradientVessel.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/OrientationSphere.h b/src/crystallization/OrientationSphere.h index c9452b2f8..20b43cdc1 100644 --- a/src/crystallization/OrientationSphere.h +++ b/src/crystallization/OrientationSphere.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/SMAC.cpp b/src/crystallization/SMAC.cpp index be8b0424b..bb0bdd5dd 100644 --- a/src/crystallization/SMAC.cpp +++ b/src/crystallization/SMAC.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/crystallization/Steinhardt.h b/src/crystallization/Steinhardt.h index 2d795a545..906f98a37 100644 --- a/src/crystallization/Steinhardt.h +++ b/src/crystallization/Steinhardt.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/function/Target.cpp b/src/function/Target.cpp index 0e719af54..e0a9de726 100644 --- a/src/function/Target.cpp +++ b/src/function/Target.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/DumpAtoms.cpp b/src/generic/DumpAtoms.cpp index 816c4beb8..582602402 100644 --- a/src/generic/DumpAtoms.cpp +++ b/src/generic/DumpAtoms.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/DumpDerivatives.cpp b/src/generic/DumpDerivatives.cpp index f46b73aec..4fdb1d050 100644 --- a/src/generic/DumpDerivatives.cpp +++ b/src/generic/DumpDerivatives.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/DumpForces.cpp b/src/generic/DumpForces.cpp index 960097565..22202a9b6 100644 --- a/src/generic/DumpForces.cpp +++ b/src/generic/DumpForces.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/DumpProjections.cpp b/src/generic/DumpProjections.cpp index dd7e57bf9..a13c18f7a 100644 --- a/src/generic/DumpProjections.cpp +++ b/src/generic/DumpProjections.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/Print.cpp b/src/generic/Print.cpp index ddb539e34..a9cb23990 100644 --- a/src/generic/Print.cpp +++ b/src/generic/Print.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/Read.cpp b/src/generic/Read.cpp index 9f4c1b8dd..6444d7da3 100644 --- a/src/generic/Read.cpp +++ b/src/generic/Read.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/generic/WrapAround.cpp b/src/generic/WrapAround.cpp index d9f3e2dd0..d17901a5f 100644 --- a/src/generic/WrapAround.cpp +++ b/src/generic/WrapAround.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/manyrestraints/ManyRestraintsBase.cpp b/src/manyrestraints/ManyRestraintsBase.cpp index 3508115bd..a3933a6a5 100644 --- a/src/manyrestraints/ManyRestraintsBase.cpp +++ b/src/manyrestraints/ManyRestraintsBase.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/mapping/Mapping.cpp b/src/mapping/Mapping.cpp index 7aa3ccb4f..b3ba5d58d 100644 --- a/src/mapping/Mapping.cpp +++ b/src/mapping/Mapping.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/mapping/Mapping.h b/src/mapping/Mapping.h index 6c81c2faf..855f91576 100644 --- a/src/mapping/Mapping.h +++ b/src/mapping/Mapping.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/mapping/PCAVars.cpp b/src/mapping/PCAVars.cpp index 8c4ff6286..aaf1ad0d1 100644 --- a/src/mapping/PCAVars.cpp +++ b/src/mapping/PCAVars.cpp @@ -1,10 +1,10 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of plumed, version 2.0. + This file is part of plumed, version 2. plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by diff --git a/src/mapping/SpathVessel.cpp b/src/mapping/SpathVessel.cpp index 9c1723a3f..74e30efac 100644 --- a/src/mapping/SpathVessel.cpp +++ b/src/mapping/SpathVessel.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/ActionVolume.cpp b/src/multicolvar/ActionVolume.cpp index 3bf77e653..13627a131 100644 --- a/src/multicolvar/ActionVolume.cpp +++ b/src/multicolvar/ActionVolume.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/ActionVolume.h b/src/multicolvar/ActionVolume.h index 669ce62f0..e8c209e6c 100644 --- a/src/multicolvar/ActionVolume.h +++ b/src/multicolvar/ActionVolume.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/AdjacencyMatrixVessel.cpp b/src/multicolvar/AdjacencyMatrixVessel.cpp index d5e54dcec..56d0938e7 100644 --- a/src/multicolvar/AdjacencyMatrixVessel.cpp +++ b/src/multicolvar/AdjacencyMatrixVessel.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/AdjacencyMatrixVessel.h b/src/multicolvar/AdjacencyMatrixVessel.h index 058b8ed23..1d1f12d29 100644 --- a/src/multicolvar/AdjacencyMatrixVessel.h +++ b/src/multicolvar/AdjacencyMatrixVessel.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/AtomValuePack.cpp b/src/multicolvar/AtomValuePack.cpp index 76d549c34..c4a8ced70 100644 --- a/src/multicolvar/AtomValuePack.cpp +++ b/src/multicolvar/AtomValuePack.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/AtomValuePack.h b/src/multicolvar/AtomValuePack.h index d1919a6a0..ce2a81daa 100644 --- a/src/multicolvar/AtomValuePack.h +++ b/src/multicolvar/AtomValuePack.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/BridgedMultiColvarFunction.h b/src/multicolvar/BridgedMultiColvarFunction.h index bc4f77f0e..b54a3779c 100644 --- a/src/multicolvar/BridgedMultiColvarFunction.h +++ b/src/multicolvar/BridgedMultiColvarFunction.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/CatomPack.h b/src/multicolvar/CatomPack.h index 5e54b05d2..d985fab78 100644 --- a/src/multicolvar/CatomPack.h +++ b/src/multicolvar/CatomPack.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2014 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/MultiColvar.h b/src/multicolvar/MultiColvar.h index d1c4e8be1..fa7359f1d 100644 --- a/src/multicolvar/MultiColvar.h +++ b/src/multicolvar/MultiColvar.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/MultiColvarBase.cpp b/src/multicolvar/MultiColvarBase.cpp index a84664893..ce728916c 100644 --- a/src/multicolvar/MultiColvarBase.cpp +++ b/src/multicolvar/MultiColvarBase.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/MultiColvarBase.h b/src/multicolvar/MultiColvarBase.h index c8868bd48..b532c4b14 100644 --- a/src/multicolvar/MultiColvarBase.h +++ b/src/multicolvar/MultiColvarBase.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/MultiColvarFunction.cpp b/src/multicolvar/MultiColvarFunction.cpp index d86ef05ad..d4822744a 100644 --- a/src/multicolvar/MultiColvarFunction.cpp +++ b/src/multicolvar/MultiColvarFunction.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/MultiColvarFunction.h b/src/multicolvar/MultiColvarFunction.h index adbabb9f2..f660b518d 100644 --- a/src/multicolvar/MultiColvarFunction.h +++ b/src/multicolvar/MultiColvarFunction.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/Sprint.cpp b/src/multicolvar/Sprint.cpp index 9d702609e..70c2c163d 100644 --- a/src/multicolvar/Sprint.cpp +++ b/src/multicolvar/Sprint.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/VolumeCavity.cpp b/src/multicolvar/VolumeCavity.cpp index 2c5fd8706..00fa6d969 100644 --- a/src/multicolvar/VolumeCavity.cpp +++ b/src/multicolvar/VolumeCavity.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/VolumeInCylinder.cpp b/src/multicolvar/VolumeInCylinder.cpp index b007995bd..6b94cd92a 100644 --- a/src/multicolvar/VolumeInCylinder.cpp +++ b/src/multicolvar/VolumeInCylinder.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/VolumeTetrapore.cpp b/src/multicolvar/VolumeTetrapore.cpp index 9182ed925..857eea12d 100644 --- a/src/multicolvar/VolumeTetrapore.cpp +++ b/src/multicolvar/VolumeTetrapore.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/XDistances.cpp b/src/multicolvar/XDistances.cpp index 7bbc6121f..976792186 100644 --- a/src/multicolvar/XDistances.cpp +++ b/src/multicolvar/XDistances.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/multicolvar/XYDistances.cpp b/src/multicolvar/XYDistances.cpp index 84173deca..a23a7dab4 100644 --- a/src/multicolvar/XYDistances.cpp +++ b/src/multicolvar/XYDistances.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/Direction.cpp b/src/reference/Direction.cpp index 97986b0f3..cfb13d6ae 100644 --- a/src/reference/Direction.cpp +++ b/src/reference/Direction.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2014 The plumed team + Copyright (c) 2012-2014 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/EuclideanDistance.cpp b/src/reference/EuclideanDistance.cpp index 0c89578a1..6c3275760 100644 --- a/src/reference/EuclideanDistance.cpp +++ b/src/reference/EuclideanDistance.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/MultiDomainRMSD.h b/src/reference/MultiDomainRMSD.h index 08d7aac6e..9e26b7b66 100644 --- a/src/reference/MultiDomainRMSD.h +++ b/src/reference/MultiDomainRMSD.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/OptimalRMSD.cpp b/src/reference/OptimalRMSD.cpp index 3147b1318..c4f08c962 100644 --- a/src/reference/OptimalRMSD.cpp +++ b/src/reference/OptimalRMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/ReferenceConfiguration.cpp b/src/reference/ReferenceConfiguration.cpp index 92aff4acd..735f07781 100644 --- a/src/reference/ReferenceConfiguration.cpp +++ b/src/reference/ReferenceConfiguration.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/ReferenceValuePack.cpp b/src/reference/ReferenceValuePack.cpp index f0fc2ddc4..024632a59 100644 --- a/src/reference/ReferenceValuePack.cpp +++ b/src/reference/ReferenceValuePack.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/ReferenceValuePack.h b/src/reference/ReferenceValuePack.h index 565975427..daf3e7fcd 100644 --- a/src/reference/ReferenceValuePack.h +++ b/src/reference/ReferenceValuePack.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/SimpleRMSD.cpp b/src/reference/SimpleRMSD.cpp index 53117f7e9..ad55f6cb0 100644 --- a/src/reference/SimpleRMSD.cpp +++ b/src/reference/SimpleRMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/reference/SingleDomainRMSD.h b/src/reference/SingleDomainRMSD.h index be39c93d6..b6487b4da 100644 --- a/src/reference/SingleDomainRMSD.h +++ b/src/reference/SingleDomainRMSD.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/secondarystructure/SecondaryStructureRMSD.h b/src/secondarystructure/SecondaryStructureRMSD.h index 257a9c130..1e0d00bd5 100644 --- a/src/secondarystructure/SecondaryStructureRMSD.h +++ b/src/secondarystructure/SecondaryStructureRMSD.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/BiasRepresentation.cpp b/src/tools/BiasRepresentation.cpp index 3c25c4fdf..abb19ca5a 100644 --- a/src/tools/BiasRepresentation.cpp +++ b/src/tools/BiasRepresentation.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/DynamicList.h b/src/tools/DynamicList.h index a1cd83635..6aedb3c12 100644 --- a/src/tools/DynamicList.h +++ b/src/tools/DynamicList.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/KernelFunctions.cpp b/src/tools/KernelFunctions.cpp index 3126970d3..1a0f3c90a 100644 --- a/src/tools/KernelFunctions.cpp +++ b/src/tools/KernelFunctions.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/MultiValue.cpp b/src/tools/MultiValue.cpp index ba81a1670..e2cc646bc 100644 --- a/src/tools/MultiValue.cpp +++ b/src/tools/MultiValue.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/MultiValue.h b/src/tools/MultiValue.h index ce6e1df24..5eeba6275 100644 --- a/src/tools/MultiValue.h +++ b/src/tools/MultiValue.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2014,2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/PDB.cpp b/src/tools/PDB.cpp index be5e34dfd..f24146ed8 100644 --- a/src/tools/PDB.cpp +++ b/src/tools/PDB.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/PDB.h b/src/tools/PDB.h index 972f08665..ef4589560 100644 --- a/src/tools/PDB.h +++ b/src/tools/PDB.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/Pbc.h b/src/tools/Pbc.h index 86adf075f..00f70c25f 100644 --- a/src/tools/Pbc.h +++ b/src/tools/Pbc.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/RMSD.cpp b/src/tools/RMSD.cpp index 0c72ed990..a8bdfcef7 100644 --- a/src/tools/RMSD.cpp +++ b/src/tools/RMSD.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/RMSD.h b/src/tools/RMSD.h index 0837eb1d2..ced168e6d 100644 --- a/src/tools/RMSD.h +++ b/src/tools/RMSD.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/SwitchingFunction.cpp b/src/tools/SwitchingFunction.cpp index b9f0fd666..92a9c2a17 100644 --- a/src/tools/SwitchingFunction.cpp +++ b/src/tools/SwitchingFunction.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/tools/SwitchingFunction.h b/src/tools/SwitchingFunction.h index 008b968c9..dcf71505c 100644 --- a/src/tools/SwitchingFunction.h +++ b/src/tools/SwitchingFunction.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2011-2014 The plumed team + Copyright (c) 2011-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/vesselbase/ActionWithVessel.cpp b/src/vesselbase/ActionWithVessel.cpp index 3d09b5ace..11267a7ea 100644 --- a/src/vesselbase/ActionWithVessel.cpp +++ b/src/vesselbase/ActionWithVessel.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/vesselbase/ActionWithVessel.h b/src/vesselbase/ActionWithVessel.h index ffef3f979..56d4e38a2 100644 --- a/src/vesselbase/ActionWithVessel.h +++ b/src/vesselbase/ActionWithVessel.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/vesselbase/BridgeVessel.h b/src/vesselbase/BridgeVessel.h index bc729de6e..34880bcf3 100644 --- a/src/vesselbase/BridgeVessel.h +++ b/src/vesselbase/BridgeVessel.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012-2014 The plumed team + Copyright (c) 2012-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/vesselbase/FunctionVessel.h b/src/vesselbase/FunctionVessel.h index 1c218e33d..364a4b4bb 100644 --- a/src/vesselbase/FunctionVessel.h +++ b/src/vesselbase/FunctionVessel.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/vesselbase/StoreDataVessel.cpp b/src/vesselbase/StoreDataVessel.cpp index afe4fad74..2c1ef07eb 100644 --- a/src/vesselbase/StoreDataVessel.cpp +++ b/src/vesselbase/StoreDataVessel.cpp @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. diff --git a/src/vesselbase/StoreDataVessel.h b/src/vesselbase/StoreDataVessel.h index 6d1aec024..9f98e29d3 100644 --- a/src/vesselbase/StoreDataVessel.h +++ b/src/vesselbase/StoreDataVessel.h @@ -1,5 +1,5 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2013,2014 The plumed team + Copyright (c) 2013-2015 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. -- GitLab