From a00a376b1afed3d5bd8cd360710a0b96e09b618a Mon Sep 17 00:00:00 2001
From: Gareth Tribello <gareth.tribello@gmail.com>
Date: Fri, 14 Dec 2018 20:30:07 +0000
Subject: [PATCH] Added more words to spelling list

---
 user-doc/spelling_words.dict | 425 +++++++++++++++++++++++++++++++++++
 1 file changed, 425 insertions(+)
 create mode 100644 user-doc/spelling_words.dict

diff --git a/user-doc/spelling_words.dict b/user-doc/spelling_words.dict
new file mode 100644
index 000000000..da3437484
--- /dev/null
+++ b/user-doc/spelling_words.dict
@@ -0,0 +1,425 @@
+ActionVolume
+abmd
+ARG
+adjmat
+arccos
+Antiparallel
+antiparallel
+ay
+az
+ballone
+basisf
+belfast
+BerndAdaptivePath
+Branduardi
+Bravais
+Openmp
+lincs
+HSP
+HLE
+HSE
+GLH
+GLU
+UNK
+TER
+NME
+iter
+cb
+hn
+nh
+protonation
+CAshifts
+CBshift
+Cshifts
+Hshifts
+HAshifts
+HBshifts
+metainference
+camshift
+bz
+camilloni
+CamShift
+Capelli
+cav
+cdot
+Chebyshev
+contactmap
+contactmatrix
+colvar
+colvars
+CMDIST
+committor
+crystallinity
+CVs
+cx
+cy
+cz
+dat
+dfs
+Diaz
+diagonalizing
+dihedral
+dimensionality
+dimred
+DSCORE
+dn
+dists
+dkor
+dk
+je
+endlink
+hs
+Ensing
+endverbatim
+expsaxs
+FES
+fes
+FMT
+frac
+FUNC
+gaussian
+GeTe
+GPATH
+Granata
+gromacs
+histogrambead
+html
+intra
+ij
+ijk
+isdb
+isometry
+jk
+jt
+kaolinite
+Kohlhoff
+labelled
+le
+legendre
+linearexpansion
+lj
+ln
+orthonormal
+overline
+mathrm
+mathbf
+mcolv
+md
+MDS
+Mises
+MPI
+mth
+multicolvar
+multicolvars
+multicolvarfunction
+MultiColvarFilter
+mymodules
+mypath
+myprotein
+nan
+NATOMS
+NBIN
+ndata
+nm
+pbc
+PCA
+pietrucci
+polycrystal
+png
+pdb
+Robustelli
+provasi
+rmsd
+saxs
+secondarystructure
+SMACOF
+sqrt
+Steinhardt
+subregion
+switchingfunction
+textrm
+tribello
+Trp
+Valsson
+Variationally
+variationally
+vatom
+ves
+VES
+virial
+Von
+Voth
+xyz
+regtest
+regtests
+sigmaMean
+acceptSigma
+histidine
+CBshifts
+Nshifts
+expca
+expcb
+expco
+expha
+exphn
+expha
+exphn
+expnh
+acceptScale
+biasDer
+ftilde
+ftilde
+Metadynamics
+metadynamics
+Debye
+Huckel
+electrostatically
+dimers
+dimerized
+un
+centroid
+mindist
+TOL
+kernelfunctions
+translational
+vibrational
+DIA
+HY
+OY
+ABF
+eABF
+drr
+UI
+Lelievre
+Zheng
+overdamped
+abf
+PMF
+Fu
+Haohao
+Lesage
+UIestimator
+Langevin
+egABF
+Zhao
+drrstate
+egABF
+xdrfile
+gro
+xtc
+trr
+xdrfile
+VMD
+GUI
+gnuplot
+histoA
+deriv
+mc
+mcfile
+traj
+awk
+ixyz
+newmc
+Marquadt
+COVAR
+observables
+prefactor
+prefactors
+adaptively
+Levenberg
+hocky
+LM
+webpage
+cgds
+POSIX
+REWEIGHT
+chebyshev
+REGRES
+WITHSURFACE
+MGAUSS
+MOUTLIERS
+LOGN
+SEM
+NMR
+chunksize
+TAGN
+solvation
+EEF
+Waals
+CHARMM
+NDX
+der
+cryo
+atomistic
+hrex
+cvlabel
+reweighting
+eRMSD
+nucleobase
+nucleobases
+pyrimdines
+vectorial
+membered
+lcs
+xy
+Rescale
+rescaling
+TAMD
+dAFED
+cltools
+multicomponents
+mincomp
+maxcomp
+isocontour
+mycontour
+isocontours
+Lennard
+rototranslate
+rototranslational
+ligand
+invariance
+DFT
+FFTW
+FFT
+sumhills
+Spiwok
+xz
+yz
+ndx
+Asphericiry
+ASPHERICITY
+Acylindricity
+ACYLINDRICITY
+Anisotropy
+GTPC
+HBOND
+acceptor
+pamm
+HBPAMM
+electronegative
+preprocessor
+intermolecular
+Karplus
+CCG
+NCG
+Voronoi
+cpp
+src
+dylib
+Lechner
+Dellago
+entropic
+manyrestraints
+matheval
+pippo
+modelling
+reweight
+posteriori
+LAGMULT
+INEQUAL
+ps
+timestep
+reweighted
+RDCs
+MFILTER
+MutiColvarFunctions
+achiral
+resnumbers
+chainIDs
+topol
+gmx
+GLY
+dna
+rna
+Davide
+GC
+chainresiduenum
+tpr
+editconf
+Jarzynski
+residuenum
+MTRANSFORM
+Kearsley
+iteratively
+SGD
+targetdist
+coeffs
+epath
+gpath
+PBMetaD
+ENDMDL
+covar
+MAHALONOBIS
+Mahalonobis
+anisotropic
+dipolar
+gyromagnetic
+GSL
+CRYST
+piv
+namespaces
+OSX
+libplumedKernel
+parallelize
+OpenMP
+NAMD
+ns
+Larmor
+allv
+Pseudorotation
+Pople
+endo
+pseudorotation
+pseudorotations
+Cremer
+NaCl
+normed
+DCs
+conformational
+reselect
+RESELECT
+rbias
+ARRAYFIRE
+SKETCHMAP
+CONJGRAD
+POINTWISE
+pointwise
+MOL
+Renormalized
+bivariate
+Frechet
+Weibull
+bilinear
+metastable
+priori
+kj
+mol
+kcal
+Hartree
+eV
+fs
+amu
+optimizers
+proj
+config
+colvartools
+mklib
+newcv
+pdbreader
+NVE
+SMAP
+COSINUS
+NOSTRETCH
+TANH
+tanh
+qquad
+molfile
+picoseconds
+orthorhombic
+Giorgino's
+curvilinear
+txt
+negativebias
+myfes
+myhisto
+Quapp
-- 
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